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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS00195 and ECOLIN_RS00200 are separated by 5 nucleotides
ECOLIN_RS00200 and ECOLIN_RS00205 are separated by 108 nucleotides
ECOLIN_RS00205 and ECOLIN_RS00210 are separated by 72 nucleotides
ECOLIN_RS00210 and ECOLIN_RS00215 are separated by 127 nucleotides
ECOLIN_RS00195: ECOLIN_RS00195 - carnitine operon protein CaiE, at 36,771 to 37,361
_RS00195
ECOLIN_RS00200: ECOLIN_RS00200 - crotonobetainyl-CoA hydratase, at 37,367 to 38,152
_RS00200
ECOLIN_RS00205: ECOLIN_RS00205 - crotonobetaine/carnitine-CoA ligase, at 38,261 to 39,814
_RS00205
ECOLIN_RS00210: ECOLIN_RS00210 - L-carnitine CoA-transferase, at 39,887 to 41,104
_RS00210
ECOLIN_RS00215: ECOLIN_RS00215 - crotonobetainyl-CoA dehydrogenase, at 41,232 to 42,374
_RS00215
Group
Condition
ECOLIN
_RS00195
ECOLIN
_RS00200
ECOLIN
_RS00205
ECOLIN
_RS00210
ECOLIN
_RS00215
phage
Bas44
-0.1
-0.5
-0.1
-0.1
-0.6
phage
RB51
-0.1
-0.4
-0.3
-0.2
-0.0
phage
RB51
-0.0
-0.1
-0.1
-0.3
-0.4
phage
Bas44
-0.1
-0.5
+0.1
-0.2
-0.2
no phage control
Control_Nissle
+0.1
-0.2
-0.4
-0.2
-0.1
phage
Bas04
-0.1
-0.1
-0.2
-0.0
-0.4
phage
Bas52
+0.3
-0.1
-0.2
-0.2
-0.5
phage
RB68
+0.2
-0.4
+0.1
-0.2
-0.4
carbon source
L-Arabinose
+0.1
-0.6
-0.1
+0.0
-0.1
carbon source
L-Rhamnose
-0.5
-0.2
+0.1
-0.1
+0.2
phage
Bas68
-0.1
-0.1
+0.1
-0.3
-0.2
phage
Bas04
+0.2
-0.1
-0.3
-0.0
-0.1
phage
Bas38
+0.2
-0.0
-0.0
-0.3
-0.1
phage
Bas38
+0.0
+0.1
-0.1
-0.2
-0.1
phage
TP7
+0.0
-0.1
+0.2
-0.1
-0.3
phage
Bas31
+0.1
-0.3
+0.1
+0.1
-0.3
phage
Bas51
+0.1
-0.1
+0.1
-0.1
-0.3
phage
K20
-0.1
-0.2
-0.1
-0.1
+0.2
phage
Phi92
-0.2
-0.2
-0.1
+0.2
+0.2
phage
Bas48
+0.1
-0.4
-0.2
+0.1
+0.3
carbon source
Casamino-acids
-0.1
-0.4
+0.0
+0.2
+0.1
phage
JK38
+0.3
-0.0
-0.1
-0.1
-0.1
phage
JK16
+0.1
+0.3
-0.0
-0.0
-0.3
phage
Bas63
-0.1
+0.3
+0.2
-0.2
-0.0
phage
Bas10
+0.3
+0.1
-0.1
+0.0
-0.2
phage
Bas37
+0.1
+0.1
-0.1
-0.1
+0.2
phage
K25
-0.1
+0.0
+0.4
+0.1
-0.1
carbon source
Casamino-acids
-0.2
+0.2
+0.0
+0.0
+0.3
phage
CEV1
+0.4
+0.1
-0.1
+0.0
+0.1
carbon source
L-Rhamnose
+0.5
-0.2
+0.0
-0.0
+0.5
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