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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS00035 and ECOLIN_RS00040 are separated by 69 nucleotides
ECOLIN_RS00040 and ECOLIN_RS00045 are separated by 278 nucleotides
ECOLIN_RS00045 and ECOLIN_RS00050 are separated by 114 nucleotides
ECOLIN_RS00050 and ECOLIN_RS33215 are separated by 47 nucleotides
ECOLIN_RS00035: ECOLIN_RS00035 - peroxide stress protein YaaA, at 5,614 to 6,390
_RS00035
ECOLIN_RS00040: ECOLIN_RS00040 - sodium:alanine symporter family protein, at 6,460 to 7,890
_RS00040
ECOLIN_RS00045: ECOLIN_RS00045 - transaldolase, at 8,169 to 9,122
_RS00045
ECOLIN_RS00050: ECOLIN_RS00050 - molybdopterin adenylyltransferase, at 9,237 to 9,824
_RS00050
ECOLIN_RS33215: ECOLIN_RS33215 - hypothetical protein, at 9,872 to 9,970
_RS33215
Group
Condition
ECOLIN
_RS00035
ECOLIN
_RS00040
ECOLIN
_RS00045
ECOLIN
_RS00050
ECOLIN
_RS33215
carbon source
D-Glucose
-0.3
-0.4
-0.6
+0.0
N.D.
phage
RB51
-0.1
-0.1
-0.6
-0.2
N.D.
carbon source
L-Rhamnose
-0.1
-0.1
-0.3
-0.4
N.D.
phage
Bas04
-0.3
-0.2
-0.3
-0.1
N.D.
phage
Bas04
-0.3
-0.1
-0.4
-0.0
N.D.
phage
Bas63
-0.2
-0.3
-0.1
-0.2
N.D.
phage
Bas27
-0.3
-0.3
-0.1
+0.0
N.D.
phage
Bas31
-0.6
-0.1
+0.1
-0.2
N.D.
no phage control
Control_Nissle
-0.2
+0.0
-0.1
-0.3
N.D.
phage
Bas22
-0.1
-0.2
+0.1
-0.3
N.D.
phage
K20
+0.2
-0.1
-0.6
+0.0
N.D.
phage
CEV1
-0.1
-0.1
-0.4
+0.2
N.D.
carbon source
L-Rhamnose
+0.0
+0.2
-0.6
-0.0
N.D.
phage
Bas21
-0.4
+0.0
+0.3
-0.2
N.D.
phage
Bas22
-0.2
-0.1
+0.3
-0.2
N.D.
phage
Bas21
-0.2
-0.1
+0.4
-0.3
N.D.
phage
Bas45
-0.2
-0.3
+0.6
-0.3
N.D.
phage
Bas37
-0.2
-0.2
+0.3
-0.1
N.D.
phage
EV219
+0.1
-0.1
+0.2
-0.4
N.D.
phage
JK38
-0.2
-0.1
+0.3
-0.0
N.D.
phage
Bas63
+0.3
-0.1
-0.1
-0.2
N.D.
phage
Bas37
-0.2
-0.1
+0.3
+0.0
N.D.
phage
P1vir
-0.4
-0.1
+0.5
+0.0
N.D.
phage
Bas38
-0.2
-0.1
+0.6
+0.0
N.D.
phage
JK38
-0.3
+0.0
+0.5
+0.1
N.D.
phage
TP7
-0.2
-0.2
+0.9
-0.1
N.D.
phage
TP7
-0.2
-0.1
+0.8
+0.1
N.D.
phage
Bas38
-0.1
-0.0
+0.7
+0.1
N.D.
carbon source
L-Arabinose
-0.2
+0.0
+2.3
-0.2
N.D.
carbon source
L-Arabinose
-0.4
+0.0
+2.6
-0.2
N.D.
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