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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS00015 and ECOLIN_RS00020 are separated by 0 nucleotides
ECOLIN_RS00020 and ECOLIN_RS00030 are separated by 213 nucleotides
ECOLIN_RS00030 and ECOLIN_RS00035 are separated by 59 nucleotides
ECOLIN_RS00035 and ECOLIN_RS00040 are separated by 69 nucleotides
ECOLIN_RS00015: ECOLIN_RS00015 - homoserine kinase, at 2,825 to 3,757
_RS00015
ECOLIN_RS00020: ECOLIN_RS00020 - threonine synthase, at 3,758 to 5,044
_RS00020
ECOLIN_RS00030: ECOLIN_RS00030 - DUF2502 domain-containing protein, at 5,258 to 5,554
_RS00030
ECOLIN_RS00035: ECOLIN_RS00035 - peroxide stress protein YaaA, at 5,614 to 6,390
_RS00035
ECOLIN_RS00040: ECOLIN_RS00040 - sodium:alanine symporter family protein, at 6,460 to 7,890
_RS00040
Group
Condition
ECOLIN
_RS00015
ECOLIN
_RS00020
ECOLIN
_RS00030
ECOLIN
_RS00035
ECOLIN
_RS00040
carbon source
Sodium-DL-Lactate
-5.2
-6.0
+0.2
+0.0
-0.2
carbon source
Sodium-DL-Lactate
-4.5
-5.0
+0.3
+0.1
+0.0
carbon source
L-Rhamnose
-1.7
-1.0
-0.6
+0.0
+0.2
phage
Bas37
-1.5
-0.3
-0.3
-0.2
-0.1
phage
JK38
-0.7
-0.4
-0.7
-0.2
-0.1
phage
TP7
-0.9
-0.5
-0.4
-0.2
-0.1
phage
Bas37
-0.6
-0.5
-0.6
-0.2
-0.2
phage
Bas38
-0.8
-0.5
-0.5
-0.2
-0.1
phage
Bas27
-0.5
-0.1
-0.6
-0.3
-0.3
phage
JK38
-0.5
-0.5
-0.5
-0.3
+0.0
phage
Phi92
-0.7
-0.4
-0.4
-0.2
-0.0
phage
TP7
-0.9
-0.1
-0.2
-0.2
-0.2
phage
Bas31
-0.6
-0.5
+0.1
-0.6
-0.1
phage
P1vir
-0.3
-0.2
-0.6
-0.4
-0.1
phage
Bas04
-0.4
-0.3
-0.2
-0.3
-0.1
phage
Bas04
+0.1
-0.5
-0.4
-0.3
-0.2
phage
Bas21
-0.5
+0.1
-0.5
-0.4
+0.0
phage
JK16
-0.5
-0.2
-0.4
-0.2
+0.1
phage
K25
-0.3
-0.5
-0.3
+0.2
-0.0
phage
Bas51
-0.7
-0.2
+0.2
-0.0
-0.1
phage
CEV1
+0.2
-0.3
-0.5
-0.1
-0.1
no phage control
Control_Nissle
+0.2
-0.2
-0.9
+0.2
-0.1
carbon source
L-Arabinose
-0.2
-0.7
+0.3
-0.2
+0.0
phage
Bas27
-0.6
+0.2
+0.2
-0.3
-0.0
phage
Bas52
-0.7
-0.0
+0.4
-0.1
-0.0
phage
Bas21
+0.2
-0.4
+0.3
-0.2
-0.1
phage
RB68
+0.6
-0.4
-0.2
-0.1
+0.0
phage
Bas63
+0.2
-0.2
+0.4
-0.2
-0.3
carbon source
D-Glucose
+0.7
+1.5
+0.7
-0.3
-0.4
carbon source
D-Glucose
+1.2
+2.9
+0.2
-0.0
-0.1
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