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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ECOLIN_RS00005 and ECOLIN_RS00010 are separated by 105 nucleotides
ECOLIN_RS00010 and ECOLIN_RS00015 are separated by 1 nucleotides
ECOLIN_RS00015 and ECOLIN_RS00020 are separated by 0 nucleotides
ECOLIN_RS00020 and ECOLIN_RS00030 are separated by 213 nucleotides
ECOLIN_RS00005: ECOLIN_RS00005 - thr operon leader peptide, at 190 to 255
_RS00005
ECOLIN_RS00010: ECOLIN_RS00010 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 361 to 2,823
_RS00010
ECOLIN_RS00015: ECOLIN_RS00015 - homoserine kinase, at 2,825 to 3,757
_RS00015
ECOLIN_RS00020: ECOLIN_RS00020 - threonine synthase, at 3,758 to 5,044
_RS00020
ECOLIN_RS00030: ECOLIN_RS00030 - DUF2502 domain-containing protein, at 5,258 to 5,554
_RS00030
Group
Condition
ECOLIN
_RS00005
ECOLIN
_RS00010
ECOLIN
_RS00015
ECOLIN
_RS00020
ECOLIN
_RS00030
carbon source
Sodium-DL-Lactate
-1.4
-2.6
-5.2
-6.0
+0.2
carbon source
Sodium-DL-Lactate
-1.3
-2.7
-4.5
-5.0
+0.3
carbon source
L-Rhamnose
-0.5
-0.3
-1.7
-1.0
-0.6
phage
JK38
-0.7
-0.1
-0.7
-0.4
-0.7
phage
K25
-1.2
-0.1
-0.3
-0.5
-0.3
phage
Bas38
-0.4
-0.2
-0.8
-0.5
-0.5
phage
Bas37
+0.1
-0.2
-1.5
-0.3
-0.3
phage
Bas38
-1.0
-0.3
-0.1
-0.6
-0.1
phage
K25
-1.0
-0.1
-0.0
-0.4
-0.2
phage
TP7
-0.2
-0.3
-0.9
-0.1
-0.2
phage
Bas04
-0.8
-0.1
+0.1
-0.5
-0.4
phage
JK38
+0.3
-0.3
-0.5
-0.5
-0.5
carbon source
L-Rhamnose
-0.3
-0.3
-0.7
-0.3
-0.1
phage
TP7
+0.6
-0.3
-0.9
-0.5
-0.4
phage
JK16
-0.5
-0.1
-0.2
-0.3
-0.5
phage
Bas37
+0.4
-0.2
-0.6
-0.5
-0.6
phage
Bas31
-0.2
-0.1
-0.6
-0.5
+0.1
phage
Phi92
+0.4
-0.1
-0.7
-0.4
-0.4
phage
Bas52
-0.8
-0.1
+0.1
-0.3
+0.5
no phage control
Control_Nissle
+0.4
-0.2
+0.2
-0.2
-0.9
carbon source
Casamino-acids
-0.7
+0.1
+0.4
-0.5
-0.0
phage
Bas04
+0.6
-0.2
-0.4
-0.3
-0.2
phage
CEV1
+0.5
-0.2
+0.2
-0.3
-0.5
carbon source
L-Arabinose
-0.4
+0.7
-0.2
-0.7
+0.3
no phage control
Control_Nissle
+0.8
-0.3
-0.4
+0.1
-0.2
phage
RB68
+0.5
-0.2
+0.6
-0.4
-0.2
carbon source
L-Arabinose
-0.1
+1.0
+0.2
-0.4
-0.0
phage
Bas63
+1.0
-0.3
+0.2
-0.2
+0.4
carbon source
D-Glucose
-1.2
+0.1
+0.7
+1.5
+0.7
carbon source
D-Glucose
-0.7
-0.2
+1.2
+2.9
+0.2
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