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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3516 and Dsui_3517 overlap by 4 nucleotides
Dsui_3517 and Dsui_3518 are separated by 84 nucleotides
Dsui_3518 and Dsui_3519 are separated by 72 nucleotides
Dsui_3519 and Dsui_3520 are separated by 166 nucleotides
Dsui_3516: Dsui_3516 - hypothetical protein, at 3,779,723 to 3,781,249
_3516
Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076
_3517
Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523
_3518
Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137
_3519
Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411
_3520
Group
Condition
Dsui
_3516
Dsui
_3517
Dsui
_3518
Dsui
_3519
Dsui
_3520
stress
ALP with Nickel (II) chloride 3.5 mM
-0.2
-0.0
-0.8
+0.0
-5.3
stress
ALP with Zinc 2 mM
-0.4
-0.4
-0.5
+0.2
-5.1
stress
ALP with Cobalt chloride 0.25 mM
-0.3
-0.3
-0.1
+0.1
-4.8
stress
ALP with Nickel (II) chloride 1.5 mM
-0.2
-0.2
-0.1
+0.2
-5.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.3
+0.0
+0.2
-5.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.3
+0.3
+0.1
-4.9
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.1
+0.1
+0.1
-4.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-0.3
+0.2
+0.1
-4.6
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.3
-0.1
-0.0
+0.2
-4.3
stress
ALP with Zinc 1 mM
-0.2
-0.0
-0.6
+0.1
-3.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.1
-0.2
+0.3
+0.2
-4.0
stress
ALP with Nickel (II) chloride 2.5 mM
+0.5
+0.0
-0.3
+0.6
-4.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-0.1
+0.3
+0.3
-4.2
stress
ALP with Cobalt chloride 0.2 mM
-0.1
-0.2
-0.2
+0.0
-2.9
carbon source
a-Ketoglutaric (C)
-0.4
-0.2
+0.2
-0.1
-3.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-0.2
+0.3
+0.3
-3.9
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
+0.2
+0.0
-3.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.1
+0.2
+0.2
-3.7
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-0.2
+0.2
+0.3
-3.9
stress
ALP with nitrate 75 mM
-0.2
-0.3
-0.6
+0.0
-2.3
stress
rich media with sodium chlorite 0.16 mM
-0.5
-0.3
-0.0
-0.1
-2.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.1
-0.2
+0.0
+0.2
-3.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.1
-0.2
-0.0
+0.2
-3.1
stress
ALP with nitrite 0.3 mM
-0.3
-0.2
-0.5
-0.0
-1.8
stress
ALP with nitrate 50 mM
-0.3
-0.3
-0.4
+0.0
-1.8
stress
ALP with Chloride 75 mM
-0.2
-0.4
-0.2
+0.1
-2.1
carbon source
propionate (C)
-0.2
-0.8
+0.2
+0.0
-1.8
stress
ALP with copper (II) chloride 0.6 mM
+0.0
+0.2
+0.7
-0.0
-3.3
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.3
+0.3
+0.4
+0.1
-2.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.2
-0.1
+0.3
+0.3
-2.9
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