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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3390 and Dsui_3391 are separated by 24 nucleotides
Dsui_3391 and Dsui_3392 are separated by 131 nucleotides
Dsui_3392 and Dsui_3393 overlap by 8 nucleotides
Dsui_3393 and Dsui_3394 are separated by 186 nucleotides
Dsui_3390: Dsui_3390 - hypothetical protein, at 3,634,562 to 3,635,101
_3390
Dsui_3391: Dsui_3391 - putative glutamine amidotransferase, at 3,635,126 to 3,635,905
_3391
Dsui_3392: Dsui_3392 - carboxylate-amine ligase, YbdK family, at 3,636,037 to 3,637,161
_3392
Dsui_3393: Dsui_3393 - Kef-type K+ transport system, membrane component, at 3,637,154 to 3,638,398
_3393
Dsui_3394: Dsui_3394 - P-type ATPase, translocating, at 3,638,585 to 3,641,332
_3394
Group
Condition
Dsui
_3390
Dsui
_3391
Dsui
_3392
Dsui
_3393
Dsui
_3394
stress
ALP with nitrate 75 mM
-0.6
+0.2
-5.2
-4.9
-0.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.2
-5.0
-5.4
-0.3
stress
ALP with nitrate 50 mM
-0.4
+0.3
-4.8
-4.6
-0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-0.2
-4.1
-5.1
-0.3
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.0
-3.3
-5.7
-0.4
stress
ALP with copper (II) chloride 0.6 mM
-0.6
-0.9
-2.5
-4.6
-0.6
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
+0.0
-3.8
-4.3
-0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
+0.2
-3.2
-4.8
-0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.1
-4.1
-4.2
-0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.0
-4.1
-3.9
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-0.0
-4.2
-3.7
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.1
+0.0
-3.7
-4.0
-0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.2
-4.3
-3.3
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.1
-3.9
-3.8
-0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
-0.1
-4.0
-3.1
-0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
+0.2
-4.0
-3.5
-0.4
stress
ALP with Zinc 2 mM
-0.9
-0.2
-2.7
-2.5
-0.9
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.0
+0.0
-3.7
-2.8
-0.3
stress
ALP with Chloride 75 mM
-0.0
+0.1
-3.0
-3.2
-0.6
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.6
+0.3
-2.4
-3.1
-0.5
stress
ALP with Nickel (II) chloride 3.5 mM
-0.3
-0.1
-2.3
-3.1
-0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.2
-0.2
-2.7
-2.9
-0.5
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.1
+0.5
-3.0
-3.1
-0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.1
+0.1
-3.6
-2.3
-0.4
stress
ALP with Cisplatin 0.0009 mg/ml
-0.3
-0.2
-2.3
-2.4
-0.9
stress
ALP with nitrite 0.45 mM
-0.6
+0.0
-2.1
-2.2
-0.7
stress
ALP with sodium fluoride 40 mM
-0.5
+0.4
-2.4
-2.5
-0.4
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.1
+0.6
-3.1
-2.6
-0.3
stress
ALP with sodium fluoride 30 mM
-0.5
+0.2
-2.5
-1.9
-0.5
stress
ALP with Nickel (II) chloride 2.5 mM
-0.4
+0.7
-2.6
-2.6
-0.2
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