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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3260 and Dsui_3261 are separated by 116 nucleotides
Dsui_3261 and Dsui_3262 are separated by 16 nucleotides
Dsui_3262 and Dsui_3263 are separated by 148 nucleotides
Dsui_3263 and Dsui_3264 are separated by 20 nucleotides
Dsui_3260: Dsui_3260 - vacuolar-type H(+)-translocating pyrophosphatase, at 3,499,080 to 3,501,149
_3260
Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534
_3261
Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204
_3262
Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132
_3263
Dsui_3264: Dsui_3264 - hypothetical protein, at 3,504,153 to 3,504,329
_3264
Group
Condition
Dsui
_3260
Dsui
_3261
Dsui
_3262
Dsui
_3263
Dsui
_3264
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
+0.5
N.D.
N.D.
-6.6
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.5
-0.8
N.D.
N.D.
-0.0
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.4
-0.7
N.D.
N.D.
+0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.1
-0.3
N.D.
N.D.
+0.6
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.3
-0.1
N.D.
N.D.
-0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-0.1
N.D.
N.D.
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.0
-0.3
N.D.
N.D.
+0.5
carbon source
R2A with sodium pyruvate
+0.2
-0.3
N.D.
N.D.
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.1
-0.2
N.D.
N.D.
+0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.9
-0.2
N.D.
N.D.
+0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.2
N.D.
N.D.
+0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.9
-0.2
N.D.
N.D.
+0.7
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.3
N.D.
N.D.
+0.8
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-0.3
N.D.
N.D.
+0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.7
+0.1
N.D.
N.D.
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.1
N.D.
N.D.
+0.6
stress
ALP with Zinc 2 mM
-0.6
+0.1
N.D.
N.D.
+0.2
stress
ALP with nitrate 75 mM
-0.4
+0.1
N.D.
N.D.
+0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.7
+0.0
N.D.
N.D.
+0.7
stress
ALP with nitrate 50 mM
-0.4
+0.0
N.D.
N.D.
+0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
-0.2
N.D.
N.D.
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
+0.0
N.D.
N.D.
+0.7
stress
rich media with sodium chlorite 0.16 mM
+0.4
+0.2
N.D.
N.D.
-0.3
stress
ALP with Cobalt chloride 0.25 mM
-0.3
+0.4
N.D.
N.D.
+0.2
stress
ALP with copper (II) chloride 0.6 mM
-0.4
+0.3
N.D.
N.D.
+0.4
carbon source
propionate (C)
-0.2
+0.1
N.D.
N.D.
+0.5
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.3
+0.3
N.D.
N.D.
+0.6
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.3
+0.5
N.D.
N.D.
-0.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.3
+0.5
N.D.
N.D.
+0.6
stress
ALP with Nickel (II) chloride 2.5 mM
+0.2
+0.8
N.D.
N.D.
+0.9
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