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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3203 and Dsui_3204 are separated by 68 nucleotides
Dsui_3204 and Dsui_3205 are separated by 90 nucleotides
Dsui_3205 and Dsui_3206 are separated by 80 nucleotides
Dsui_3206 and Dsui_3207 overlap by 7 nucleotides
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738
_3207
Group
Condition
Dsui
_3203
Dsui
_3204
Dsui
_3205
Dsui
_3206
Dsui
_3207
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.4
N.D.
+0.3
-0.3
-1.7
stress
ALP with Zinc 2 mM
-1.2
N.D.
+0.2
-1.2
+0.2
carbon source
D,L-Lactate (C)
-1.1
N.D.
-0.0
+0.4
-1.3
stress
ALP with Nickel (II) chloride 2.5 mM
-0.4
N.D.
+0.5
-0.9
-1.2
stress
ALP with nitrate 50 mM
-0.9
N.D.
+0.1
-0.3
-0.7
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.1
N.D.
+0.2
+0.4
-2.3
stress
ALP with Cisplatin 0.0008 mg/ml
-1.2
N.D.
+0.3
-0.7
-0.2
stress
ALP with Nickel (II) chloride 1.5 mM
-0.2
N.D.
+0.2
+0.1
-1.8
stress
ALP with nitrite 0.15 mM
-0.3
N.D.
+0.1
-0.3
-1.2
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.4
N.D.
+0.1
-0.7
-0.7
carbon source
R2A with sodium pyruvate
-0.0
N.D.
+0.1
-0.0
-1.7
carbon source
defined media with 30 mM sodium lactate
-0.5
N.D.
+0.4
-0.2
-1.3
carbon source
L-Lactate (C)
-0.5
N.D.
+0.1
-0.6
-0.6
stress
ALP with Cobalt chloride 0.25 mM
-0.2
N.D.
+0.4
-0.7
-0.9
stress
ALP with nitrite 0.45 mM
-0.7
N.D.
+0.2
-0.8
-0.0
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.6
N.D.
+0.1
+0.4
-1.1
stress
ALP with Cisplatin 0.0009 mg/ml
-1.5
N.D.
+0.1
-0.5
+0.8
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.5
N.D.
+0.7
+0.2
-1.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.2
N.D.
+0.4
-0.0
-1.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.2
N.D.
-0.3
+0.5
-1.1
stress
ALP with sodium fluoride 40 mM
-0.6
N.D.
+0.2
+0.3
-0.6
anaerobic
Anaero. lactate (C), nitrate electron acceptor
+0.2
N.D.
+0.2
+0.4
-1.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.1
N.D.
+0.5
-0.6
-0.6
stress
ALP with Cisplatin 0.0007 mg/ml
-1.8
N.D.
+0.5
-0.2
+1.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.0
N.D.
+0.7
-0.4
-0.6
stress
rich media with hydrogen peroxide 5 mM
+0.2
N.D.
+0.1
+0.6
-1.2
stress
ALP with nitrate 75 mM
-0.7
N.D.
+0.2
+0.1
+0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
+0.6
-0.4
-0.3
carbon source
a-Ketoglutaric (C)
-0.5
N.D.
+0.3
+0.5
+0.7
stress
ALP with Fusidic 0.01 mg/ml
+0.1
N.D.
+0.4
+0.2
+1.4
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