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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3068 and Dsui_3069 are separated by 52 nucleotides
Dsui_3069 and Dsui_3070 are separated by 58 nucleotides
Dsui_3070 and Dsui_3071 overlap by 70 nucleotides
Dsui_3071 and Dsui_3072 are separated by 97 nucleotides
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343
_3069
Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253
_3070
Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972
_3071
Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725
_3072
Group
Condition
Dsui
_3068
Dsui
_3069
Dsui
_3070
Dsui
_3071
Dsui
_3072
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
-1.6
+0.2
+0.3
-7.0
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
-1.2
+0.3
+0.3
-5.0
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
-0.8
+0.3
+0.5
-5.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-3.1
+0.1
+0.2
-0.9
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-2.8
-0.0
+0.2
-0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-3.3
+0.1
+0.3
-0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-3.0
+0.2
+0.3
-0.5
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-1.9
-0.1
-0.0
-1.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-2.8
+0.0
+0.4
-0.4
stress
ALP with Thallium(I) acetate 0.004 mg/ml
N.D.
-2.5
-0.1
+0.0
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-2.8
+0.2
+0.3
-0.4
carbon source
R2A with sodium pyruvate
N.D.
-0.9
-0.5
+0.0
-1.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-2.5
+0.1
+0.2
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-2.8
+0.2
+0.3
-0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
-2.6
+0.2
+0.3
-0.4
carbon source
defined media with 30 mM sodium lactate
N.D.
-0.5
+0.1
-0.7
-1.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-1.1
+0.1
-0.4
-1.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-1.4
-0.0
-0.0
-1.0
stress
ALP with nitrate 75 mM
N.D.
-2.4
+0.1
+0.1
-0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-0.8
-0.1
-0.3
-1.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
-1.7
+0.2
+0.3
-0.9
stress
ALP with nitrate 50 mM
N.D.
-2.3
+0.3
+0.1
-0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-2.1
+0.0
+0.1
-0.2
stress
ALP with Cobalt chloride 0.25 mM
N.D.
-2.2
+0.2
+0.1
-0.1
stress
ALP with Zinc 2 mM
N.D.
-2.2
+0.3
+0.1
-0.1
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
-2.2
+0.3
+0.3
-0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
-1.6
+0.1
+0.3
-0.4
stress
ALP with Fusidic 0.02 mg/ml
N.D.
+2.4
-0.1
+0.3
-0.0
stress
ALP with Fusidic 0.01 mg/ml
N.D.
+2.8
-0.2
+0.2
+0.1
stress
ALP with Fusidic 0.007 mg/ml
N.D.
+2.9
-0.2
+0.5
-0.2
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