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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3016 and Dsui_3017 are separated by 159 nucleotides
Dsui_3017 and Dsui_3018 are separated by 36 nucleotides
Dsui_3018 and Dsui_3019 are separated by 9 nucleotides
Dsui_3019 and Dsui_3020 are separated by 22 nucleotides
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300
_3017
Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638
_3018
Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433
_3019
Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968
_3020
Group
Condition
Dsui
_3016
Dsui
_3017
Dsui
_3018
Dsui
_3019
Dsui
_3020
stress
ALP with copper (II) chloride 0.6 mM
+1.5
-1.6
-0.8
-0.4
-0.8
carbon source
a-Ketoglutaric (C)
-0.6
-0.5
-0.3
-0.4
-0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
-0.4
-0.4
-0.4
-0.4
stress
rich media with sodium chlorite 0.16 mM
-0.1
-0.8
-0.2
-0.3
+0.0
stress
ALP with Zinc 2 mM
+0.3
-0.4
-0.7
-0.3
-0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.7
-0.9
-0.3
-0.2
-0.6
stress
ALP with Cisplatin 0.0008 mg/ml
+0.4
-0.6
-0.4
-0.4
-0.3
carbon source
defined media with 30 mM sodium lactate
-0.4
-0.6
-0.1
-0.2
+0.2
carbon source
defined media with 30 mM sodium lactate
+0.3
-0.7
-0.1
-0.3
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
-0.3
-0.3
-0.0
-0.8
stress
ALP with nitrite 0.3 mM
+0.2
-0.5
-0.3
+0.1
-0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
+0.2
+0.2
-0.2
-0.3
carbon source
defined media with 40 mM sodium acetate
-0.6
-0.5
+0.2
+0.0
+0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.6
-0.7
-0.0
-0.2
-0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.2
-0.3
-0.3
+0.3
-0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.7
-0.4
-0.1
-0.3
-0.2
carbon source
defined media with 30 mM sodium lactate
+0.2
-0.4
-0.0
-0.5
+0.6
stress
ALP with Cisplatin 0.0007 mg/ml
+0.4
-0.4
-0.1
-0.3
+0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
+0.6
-0.1
-0.1
-0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+1.1
-0.4
+0.1
-0.4
-0.5
stress
ALP with Cisplatin 0.0009 mg/ml
+0.3
+0.3
-0.3
-0.7
+0.5
stress
ALP with Cobalt chloride 0.25 mM
+0.5
+0.2
-0.2
-0.1
-0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.5
+0.3
+0.3
-0.1
+0.1
alp rich
rich media
+0.5
-0.4
-0.1
-0.3
+0.4
stress
ALP with Nickel (II) chloride 3.5 mM
+0.5
+0.1
-0.1
+0.2
-0.4
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.7
-0.2
+0.3
-0.1
-0.2
stress
ALP with Fusidic 0.02 mg/ml
+0.2
-0.1
-0.4
+0.2
+0.6
stress
ALP with Fusidic 0.01 mg/ml
+0.2
-0.1
+0.5
-0.1
+0.5
carbon source
R2A with sodium pyruvate
+0.4
+0.8
-0.1
+0.3
+0.0
stress
ALP with Nickel (II) chloride 2.5 mM
+1.3
+0.1
+0.1
+0.3
-0.2
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