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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_3002 and Dsui_3003 are separated by 91 nucleotides
Dsui_3003 and Dsui_3004 are separated by 103 nucleotides
Dsui_3004 and Dsui_3005 are separated by 11 nucleotides
Dsui_3005 and Dsui_3006 are separated by 136 nucleotides
Dsui_3002: Dsui_3002 - PAS domain S-box, at 3,212,379 to 3,214,928
_3002
Dsui_3003: Dsui_3003 - molecular chaperone of HSP90 family, at 3,215,020 to 3,216,936
_3003
Dsui_3004: Dsui_3004 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,217,040 to 3,219,646
_3004
Dsui_3005: Dsui_3005 - transcription elongation factor GreB, at 3,219,658 to 3,220,215
_3005
Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969
_3006
Group
Condition
Dsui
_3002
Dsui
_3003
Dsui
_3004
Dsui
_3005
Dsui
_3006
stress
ALP with perchlorate 6 mM
-1.3
+0.1
-0.0
+0.2
-2.5
stress
ALP with Bacitracin 0.2 mg/ml
-1.2
+0.2
+0.0
+0.1
-2.4
stress
ALP with Cobalt chloride 0.2 mM
-1.4
+0.1
-0.1
+0.0
-1.8
stress
ALP with Zinc 2 mM
-1.7
+0.2
+0.1
+0.2
-1.9
stress
ALP with perchlorate 3 mM
-1.0
+0.2
+0.0
+0.1
-2.5
stress
ALP with nitrate 75 mM
-1.5
+0.1
+0.0
+0.1
-2.0
stress
ALP with Chloride 75 mM
-1.0
+0.1
-0.0
+0.1
-2.4
stress
ALP with perchlorate 12 mM
-1.0
+0.1
+0.0
+0.2
-2.3
carbon source
L-Lactate (C)
-1.3
+0.2
+0.1
+0.0
-2.1
alp richb
ALP
-1.4
+0.0
+0.1
+0.1
-1.9
stress
ALP with Cobalt chloride 0.25 mM
-1.6
+0.2
+0.1
+0.0
-1.7
stress
ALP with sodium fluoride 30 mM
-1.3
+0.0
-0.1
+0.2
-1.8
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-1.6
+0.2
+0.1
+0.3
-1.9
stress
ALP with sodium fluoride 40 mM
-1.5
+0.1
+0.1
+0.2
-1.9
stress
ALP with nitrate 50 mM
-1.3
+0.1
+0.0
+0.2
-2.0
carbon source
D,L-Lactate (C)
-1.0
+0.2
+0.0
+0.1
-2.2
carbon source
pyruvate (C)
-0.9
+0.2
-0.0
+0.1
-2.2
stress
ALP with nitrite 0.3 mM
-1.3
+0.1
+0.1
+0.2
-2.0
stress
ALP with Nickel (II) chloride 3.5 mM
-1.4
+0.1
+0.0
+0.2
-1.8
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-1.3
+0.2
-0.0
+0.4
-2.0
carbon source
D,L-Lactate (C)
-0.9
+0.2
+0.1
+0.2
-2.2
stress
ALP with nitrite 0.45 mM
-1.2
+0.2
+0.1
+0.2
-1.9
stress
ALP with Zinc 1 mM
-1.3
+0.1
+0.1
+0.3
-1.9
stress
ALP with nitrite 0.15 mM
-1.1
+0.1
+0.1
+0.2
-1.9
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-1.1
+0.2
+0.1
+0.4
-1.9
carbon source
propionate (C)
-0.7
+0.3
+0.1
+0.3
-2.1
stress
ALP with Cisplatin 0.0008 mg/ml
-1.1
+0.3
+0.1
+0.3
-1.7
stress
ALP with Fusidic 0.02 mg/ml
-0.5
+0.0
-0.0
+0.7
-2.2
stress
ALP with Cisplatin 0.0009 mg/ml
-0.7
+0.2
+0.2
+0.6
-1.7
stress
ALP with Nickel (II) chloride 2.5 mM
-1.1
+0.6
+0.4
+0.3
-1.2
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