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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2925 and Dsui_2926 are separated by 98 nucleotides
Dsui_2926 and Dsui_2927 are separated by 243 nucleotides
Dsui_2927 and Dsui_2928 are separated by 175 nucleotides
Dsui_2928 and Dsui_2929 are separated by 108 nucleotides
Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424
_2925
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454
_2927
Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652
_2928
Dsui_2929: Dsui_2929 - hypothetical protein, at 3,132,761 to 3,133,180
_2929
Group
Condition
Dsui
_2925
Dsui
_2926
Dsui
_2927
Dsui
_2928
Dsui
_2929
stress
ALP with copper (II) chloride 0.6 mM
-1.2
-0.7
-0.7
-0.7
-3.1
stress
ALP with Nickel (II) chloride 1.5 mM
-1.4
-1.2
-1.3
-1.0
-0.8
stress
ALP with Cisplatin 0.0007 mg/ml
-1.1
-1.3
-0.7
-1.0
-0.9
stress
ALP with Zinc 2 mM
-0.4
+0.0
+0.0
-1.3
-1.5
stress
ALP with Cobalt chloride 0.25 mM
-1.0
-0.3
-0.0
-1.4
-0.3
stress
ALP with Nickel (II) chloride 3.5 mM
-0.9
-0.2
-0.8
-0.6
-0.4
stress
ALP with nitrate 75 mM
-0.2
+0.0
-2.1
-0.8
+0.1
ALP with 3 all (C)s
-0.1
-0.3
-1.8
-0.2
-0.2
stress
ALP with sodium fluoride 30 mM
-0.8
-0.2
-0.7
-0.6
-0.0
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.4
-0.4
-0.8
+0.0
-0.8
stress
ALP with Bacitracin 0.2 mg/ml
-0.4
+0.3
-2.1
-0.1
+0.0
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.3
-0.4
-0.7
-0.7
-0.1
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.4
-0.4
-0.2
-1.1
-0.2
stress
ALP with sodium fluoride 40 mM
-0.5
-0.3
-0.9
-0.3
-0.0
stress
ALP with nitrate 50 mM
-0.3
+0.1
-0.8
-0.8
-0.0
stress
ALP with Nickel (II) chloride 2.5 mM
-0.7
-0.0
-0.3
-0.1
+0.7
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.4
-0.0
+1.2
-0.3
-0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
-0.0
+1.0
-0.1
-0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-0.1
+1.0
-0.4
+0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.8
+0.2
+1.5
-0.4
-0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.1
-0.1
+1.1
-0.4
+0.2
stress
ALP with Fusidic 0.007 mg/ml
+0.0
+0.4
+0.7
+0.2
-0.6
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.2
+0.2
+1.2
+0.1
-0.4
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.8
-0.0
+2.0
+0.0
-0.3
stress
ALP with Fusidic 0.01 mg/ml
+0.1
+0.3
+0.7
+0.6
-0.6
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.6
+0.0
+2.2
-0.0
-0.2
stress
rich media with sodium chlorite 0.16 mM
+0.3
-0.1
+1.2
+0.0
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.3
+0.1
+1.8
-0.1
+0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.1
+0.4
+0.4
+0.6
+0.4
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.7
+0.3
+2.2
+0.0
+0.2
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