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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2693 and Dsui_2694 are separated by 104 nucleotides
Dsui_2694 and Dsui_2695 are separated by 326 nucleotides
Dsui_2695 and Dsui_2696 are separated by 5 nucleotides
Dsui_2696 and Dsui_2697 are separated by 57 nucleotides
Dsui_2693: Dsui_2693 - translation elongation factor Ts, at 2,844,814 to 2,845,710
_2693
Dsui_2694: Dsui_2694 - ribosomal protein S2, at 2,845,815 to 2,846,564
_2694
Dsui_2695: Dsui_2695 - methionine aminopeptidase, type I, at 2,846,891 to 2,847,688
_2695
Dsui_2696: Dsui_2696 - (protein-PII) uridylyltransferase, at 2,847,694 to 2,850,285
_2696
Dsui_2697: Dsui_2697 - peptide deformylase, at 2,850,343 to 2,850,891
_2697
Group
Condition
Dsui
_2693
Dsui
_2694
Dsui
_2695
Dsui
_2696
Dsui
_2697
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-2.0
+0.1
-3.6
-1.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-1.5
+0.2
-3.6
-0.9
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-1.9
+0.4
-3.4
-0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-1.3
+0.3
-3.3
-0.7
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-4.3
+0.1
-0.4
-0.2
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
N.D.
-1.9
-0.2
-2.4
-0.1
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
N.D.
-1.9
+0.0
-1.9
-0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-2.9
-0.3
-0.1
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-2.7
-0.0
-0.3
-0.5
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-2.0
+0.2
-0.2
-0.5
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor
N.D.
-1.9
+0.0
-0.0
-0.4
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
N.D.
-1.4
-0.8
-0.2
+0.2
stress
ALP with Cobalt chloride 0.25 mM
N.D.
-2.7
-1.1
+1.5
+0.1
carbon source
defined media with 40 mM sodium acetate
N.D.
-1.8
+0.4
-0.3
+0.3
stress
ALP with Dimethyl Sulfoxide 2 vol%
N.D.
-0.2
-1.8
+0.5
+0.0
stress
ALP with Nickel (II) chloride 3.5 mM
N.D.
-1.2
-0.9
+0.7
+0.2
stress
ALP with Cobalt chloride 0.2 mM
N.D.
-1.3
-0.9
+0.9
+0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.5
-0.6
-0.8
+0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.7
-0.7
-0.8
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
-1.5
-0.4
+1.4
+0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.9
-0.7
-0.7
+0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.7
-0.5
-0.6
+0.6
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+1.4
-0.5
-0.9
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.7
-0.6
-0.4
+0.7
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+1.3
-0.3
-0.8
+0.4
stress
ALP with copper (II) chloride 0.6 mM
N.D.
+2.2
-2.3
+1.5
-0.7
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+1.2
-0.4
-0.4
+1.0
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-2.5
+3.6
+0.8
+0.0
stress
ALP with Fusidic 0.007 mg/ml
N.D.
-2.2
+3.6
+0.7
+0.1
stress
ALP with Fusidic 0.02 mg/ml
N.D.
-2.0
+3.4
+0.8
+0.1
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