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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2684 and Dsui_2685 are separated by 21 nucleotides
Dsui_2685 and Dsui_2686 are separated by 15 nucleotides
Dsui_2686 and Dsui_2687 are separated by 2 nucleotides
Dsui_2687 and Dsui_2688 overlap by 4 nucleotides
Dsui_2684: Dsui_2684 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 2,835,409 to 2,836,395
_2684
Dsui_2685: Dsui_2685 - outer membrane protein, at 2,836,417 to 2,836,938
_2685
Dsui_2686: Dsui_2686 - outer membrane protein assembly complex, YaeT protein, at 2,836,954 to 2,839,248
_2686
Dsui_2687: Dsui_2687 - RIP metalloprotease RseP, at 2,839,251 to 2,840,651
_2687
Dsui_2688: Dsui_2688 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,840,648 to 2,841,832
_2688
Group
Condition
Dsui
_2684
Dsui
_2685
Dsui
_2686
Dsui
_2687
Dsui
_2688
stress
ALP with copper (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-4.1
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
N.D.
N.D.
-4.0
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-3.7
N.D.
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
N.D.
N.D.
-3.5
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
N.D.
N.D.
-3.0
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
-2.9
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.5
N.D.
stress
ALP with Zinc 2 mM
N.D.
N.D.
N.D.
-2.4
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.4
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-2.3
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.3
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.3
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
-2.2
N.D.
stress
ALP with nitrate 75 mM
N.D.
N.D.
N.D.
-2.2
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.1
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-2.0
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-2.0
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
N.D.
N.D.
-1.9
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.9
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
N.D.
N.D.
-1.9
N.D.
stress
ALP with Nickel (II) chloride 3.5 mM
N.D.
N.D.
N.D.
-1.9
N.D.
carbon source
L-Lactate (C)
N.D.
N.D.
N.D.
-1.9
N.D.
stress
ALP with nitrate 50 mM
N.D.
N.D.
N.D.
-1.7
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
N.D.
N.D.
-1.7
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.7
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-1.7
N.D.
stress
ALP with nitrite 0.3 mM
N.D.
N.D.
N.D.
-1.7
N.D.
carbon source
propionate (C)
N.D.
N.D.
N.D.
-1.6
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
N.D.
N.D.
-1.6
N.D.
stress
ALP with sodium fluoride 40 mM
N.D.
N.D.
N.D.
-1.6
N.D.
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