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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2598 and Dsui_2599 are separated by 729 nucleotides
Dsui_2599 and Dsui_2600 are separated by 263 nucleotides
Dsui_2600 and Dsui_2601 are separated by 371 nucleotides
Dsui_2601 and Dsui_2602 are separated by 1053 nucleotides
Dsui_2598: Dsui_2598 - hypothetical protein, at 2,753,435 to 2,754,256
_2598
Dsui_2599: Dsui_2599 - hypothetical protein, at 2,754,986 to 2,755,663
_2599
Dsui_2600: Dsui_2600 - hypothetical protein, at 2,755,927 to 2,756,136
_2600
Dsui_2601: Dsui_2601 - hypothetical protein, at 2,756,508 to 2,756,870
_2601
Dsui_2602: Dsui_2602 - Protein of unknown function (DUF3577), at 2,757,924 to 2,758,439
_2602
Group
Condition
Dsui
_2598
Dsui
_2599
Dsui
_2600
Dsui
_2601
Dsui
_2602
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-5.8
-1.5
-2.2
-0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-4.8
-1.7
-2.1
-0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-4.3
-1.6
-2.2
-0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-5.1
-1.7
-1.9
+0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-4.0
-1.6
-2.0
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-3.9
-1.3
-1.9
-0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-3.4
-1.2
-2.8
+0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.7
-3.5
-1.3
-1.9
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.6
-3.5
-1.3
-1.2
+0.0
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.6
-3.1
-1.4
-1.3
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.2
-2.8
-1.5
-1.5
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-3.2
-1.0
-1.0
+0.2
alp rich
rich media
-0.5
-1.2
-0.8
-0.9
-0.5
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.1
-1.6
-1.1
-1.4
+0.4
stress
ALP with nitrate 50 mM
-0.2
-1.8
-0.9
-0.8
-0.0
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.2
-1.7
-0.9
-0.8
-0.1
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.3
-1.7
-0.9
-0.8
+0.1
alp rich
rich media
-0.4
-1.3
-0.7
-0.7
-0.4
stress
ALP with nitrite 0.3 mM
-0.2
-1.7
-0.9
-0.8
+0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.4
-1.1
-1.0
-0.8
-0.2
stress
ALP with nitrate 75 mM
-0.2
-1.7
-0.9
-0.8
+0.0
stress
ALP with sodium fluoride 40 mM
-0.1
-1.7
-0.9
-0.7
+0.0
stress
ALP with nitrite 0.15 mM
-0.1
-1.7
-0.9
-0.7
-0.0
carbon source
defined media with 40 mM sodium acetate
+0.0
-1.0
-1.6
-0.8
-0.0
alp richb
ALP
-0.1
-1.7
-0.8
-0.7
+0.1
stress
ALP with Zinc 1 mM
+0.0
-1.6
-0.8
-0.7
-0.2
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.3
-1.8
-1.0
+0.3
-0.1
carbon source
propionate (C)
+0.4
+1.1
+0.7
-0.9
+0.2
carbon source
a-Ketoglutaric (C)
+0.5
+1.2
+0.8
-0.7
-0.3
carbon source
a-Ketoglutaric (C)
+0.5
+1.2
+0.8
-0.7
+0.1
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Dsui_2600
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