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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2586 and Dsui_2587 are separated by 1 nucleotides
Dsui_2587 and Dsui_2588 are separated by 22 nucleotides
Dsui_2588 and Dsui_2589 are separated by 10 nucleotides
Dsui_2589 and Dsui_2590 are separated by 2 nucleotides
Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058
_2586
Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385
_2587
Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262
_2588
Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994
_2589
Dsui_2590: Dsui_2590 - Pilin accessory protein (PilO), at 2,743,997 to 2,745,409
_2590
Group
Condition
Dsui
_2586
Dsui
_2587
Dsui
_2588
Dsui
_2589
Dsui
_2590
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.8
-0.7
N.D.
-1.2
-2.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.2
-0.8
N.D.
-1.1
-2.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.9
-0.8
N.D.
-1.4
-2.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.4
-0.6
N.D.
-1.3
-2.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.3
-0.6
N.D.
-1.3
-2.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.9
-0.5
N.D.
-1.6
-2.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.2
-0.8
N.D.
-1.4
-1.9
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.2
-0.8
N.D.
-1.5
-1.7
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-1.1
-0.5
N.D.
-1.4
-2.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.5
N.D.
-0.9
-2.6
alp rich
rich media
-1.6
-0.6
N.D.
-1.0
-1.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-0.4
N.D.
-1.1
-1.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.3
-0.5
N.D.
-1.3
-1.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.3
-0.0
N.D.
-1.1
-2.1
carbon source
defined media with 40 mM sodium acetate
-1.0
-0.2
N.D.
-0.8
-1.0
carbon source
defined media with 30 mM sodium lactate
-0.7
-0.5
N.D.
-0.7
-0.8
carbon source
defined media with 30 mM sodium lactate
-1.2
-0.2
N.D.
-0.6
-0.6
stress
rich media with sodium chlorite 0.16 mM
-1.1
-0.4
N.D.
-0.7
-0.4
alp rich
rich media
-0.5
-0.6
N.D.
-0.6
-0.8
carbon source
defined media with 40 mM sodium acetate
-0.8
-0.2
N.D.
-0.5
-0.7
carbon source
defined media with 40 mM sodium acetate
-1.2
-0.2
N.D.
-0.5
-0.3
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
-1.1
+0.4
N.D.
-0.1
-1.1
stress
ALP with Chloride 75 mM
+0.0
-1.3
N.D.
-0.2
+0.7
stress
ALP with Bacitracin 0.2 mg/ml
+0.6
-1.2
N.D.
-0.1
+0.2
carbon source
D-Lactate (C)
+0.2
-0.9
N.D.
+0.2
+0.9
carbon source
L-Lactate (C)
+0.3
-0.9
N.D.
+0.2
+1.1
carbon source
pyruvate (C)
+0.7
-0.9
N.D.
+0.1
+0.8
carbon source
a-Ketoglutaric (C)
+0.5
-0.6
N.D.
+0.4
+0.9
stress
ALP with Nickel (II) chloride 2.5 mM
+0.9
+0.4
N.D.
+0.8
+1.5
stress
ALP with copper (II) chloride 0.6 mM
+1.2
+0.7
N.D.
+1.2
+0.9
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