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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2582 and Dsui_2583 are separated by 390 nucleotides
Dsui_2583 and Dsui_2584 are separated by 13 nucleotides
Dsui_2584 and Dsui_2585 are separated by 1404 nucleotides
Dsui_2585 and Dsui_2586 overlap by 4 nucleotides
Dsui_2582: Dsui_2582 - hypothetical protein, at 2,735,541 to 2,736,326
_2582
Dsui_2583: Dsui_2583 - hypothetical protein, at 2,736,717 to 2,736,812
_2583
Dsui_2584: Dsui_2584 - hypothetical protein, at 2,736,826 to 2,736,966
_2584
Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075
_2585
Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058
_2586
Group
Condition
Dsui
_2582
Dsui
_2583
Dsui
_2584
Dsui
_2585
Dsui
_2586
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-1.3
N.D.
-1.3
-1.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.4
-1.6
N.D.
-1.2
-1.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-1.2
N.D.
-1.1
-1.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.4
-1.0
N.D.
-1.4
-1.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.4
-1.2
N.D.
-1.2
-1.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.3
-0.4
N.D.
-1.0
-1.8
alp rich
rich media
-0.8
-0.3
N.D.
-0.7
-1.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.4
-1.0
N.D.
-0.9
-1.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.2
-1.8
N.D.
-1.1
-0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.3
-1.2
N.D.
-0.9
-0.9
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.4
-0.8
N.D.
-1.1
-0.9
alp rich
rich media
-0.4
-0.7
N.D.
-1.1
-0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-1.4
N.D.
-0.8
-0.7
carbon source
defined media with 30 mM sodium lactate
-0.3
-0.6
N.D.
-0.4
-1.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.0
-0.9
N.D.
-0.8
-0.8
stress
ALP with perchlorate 6 mM
-0.1
-0.6
N.D.
-1.6
-0.1
carbon source
defined media with 30 mM sodium lactate
-0.3
-0.2
N.D.
-0.6
-1.3
alp rich
rich media
-0.3
-0.5
N.D.
-0.7
-0.8
carbon source
defined media with 40 mM sodium acetate
-0.3
-0.7
N.D.
-0.3
-1.0
carbon source
defined media with 30 mM sodium lactate
-0.4
-0.4
N.D.
-0.7
-0.7
stress
ALP with Fusidic 0.007 mg/ml
-0.7
-0.3
N.D.
-1.4
+0.2
stress
ALP with perchlorate 3 mM
-0.3
-0.6
N.D.
-1.1
-0.2
carbon source
defined media with 40 mM sodium acetate
-0.5
+0.0
N.D.
-0.4
-1.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.0
-1.0
N.D.
-0.8
-0.3
carbon source
defined media with 40 mM sodium acetate
-0.4
-0.5
N.D.
-0.4
-0.8
stress
rich media with hydrogen peroxide 5 mM
-0.7
-0.3
N.D.
-0.7
-0.3
stress
ALP with Bacitracin 0.2 mg/ml
+0.1
-0.5
N.D.
-1.2
+0.6
carbon source
a-Ketoglutaric (C)
+0.4
+0.1
N.D.
-1.0
+0.5
stress
ALP with Nickel (II) chloride 2.5 mM
+0.9
+0.9
N.D.
+0.1
+0.9
stress
ALP with copper (II) chloride 0.6 mM
+0.9
+1.2
N.D.
+0.4
+1.2
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