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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2544 and Dsui_2545 are separated by 14 nucleotides
Dsui_2545 and Dsui_2546 are separated by 27 nucleotides
Dsui_2546 and Dsui_2547 are separated by 250 nucleotides
Dsui_2547 and Dsui_2548 are separated by 58 nucleotides
Dsui_2544: Dsui_2544 - disulfide bond chaperone, at 2,695,537 to 2,696,394
_2544
Dsui_2545: Dsui_2545 - transcriptional regulator, Spx/MgsR family, at 2,696,409 to 2,696,756
_2545
Dsui_2546: Dsui_2546 - transcriptional accessory protein, at 2,696,784 to 2,699,099
_2546
Dsui_2547: Dsui_2547 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,699,350 to 2,702,019
_2547
Dsui_2548: Dsui_2548 - hypothetical protein, at 2,702,078 to 2,702,518
_2548
Group
Condition
Dsui
_2544
Dsui
_2545
Dsui
_2546
Dsui
_2547
Dsui
_2548
stress
ALP with copper (II) chloride 0.6 mM
-0.2
-0.3
+0.1
-0.9
-0.5
stress
ALP with Bacitracin 0.2 mg/ml
+0.6
+0.1
-1.0
-0.2
+0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.4
+0.3
-0.4
+0.2
+0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.1
-0.1
-0.3
+0.3
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
-0.1
+0.6
+0.1
-0.7
+0.1
carbon source
propionate (C)
+0.4
+0.2
+0.0
-0.3
-0.3
stress
ALP with Fusidic 0.007 mg/ml
+0.8
-0.2
+0.1
-0.3
-0.3
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.3
-0.1
-0.4
+0.6
+0.5
carbon source
R2A with sodium pyruvate
-0.4
+0.2
-0.1
+0.1
+0.4
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.1
+0.3
-0.2
+0.4
+0.2
stress
ALP with Fusidic 0.01 mg/ml
+0.9
+0.1
+0.1
-0.3
-0.1
stress
ALP with perchlorate 3 mM
+0.4
+0.2
+0.2
-0.2
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.0
+0.2
-0.4
+0.7
+0.3
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.0
+0.3
-0.4
+0.8
+0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
+0.8
-0.9
+0.1
+0.7
stress
ALP with Chloride 75 mM
+0.5
+0.3
+0.1
-0.0
+0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.7
+0.8
-1.0
+0.1
+0.9
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
+0.3
-0.2
+0.7
+0.3
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.5
+0.3
-0.2
+0.7
+0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.7
+1.0
-0.9
+0.0
+0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.8
+0.9
-0.8
+0.1
+0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.8
+1.0
-0.8
+0.1
+0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.9
+0.8
-0.7
+0.3
+0.8
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.9
+0.8
-0.8
+0.3
+0.8
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.8
+1.1
-0.7
+0.1
+0.8
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.9
+0.9
-0.7
+0.2
+0.8
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.9
+1.0
-0.7
+0.2
+0.7
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.8
+1.0
-0.6
+0.2
+0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.9
+1.0
-0.6
+0.1
+0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
+1.0
+1.2
-0.7
+0.1
+0.8
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