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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2506 and Dsui_2507 are separated by 344 nucleotides
Dsui_2507 and Dsui_2508 are separated by 729 nucleotides
Dsui_2508 and Dsui_2509 are separated by 2 nucleotides
Dsui_2509 and Dsui_2510 are separated by 11 nucleotides
Dsui_2506: Dsui_2506 - transposase, IS30 family, at 2,652,924 to 2,654,084
_2506
Dsui_2507: Dsui_2507 - hypothetical protein, at 2,654,429 to 2,654,695
_2507
Dsui_2508: Dsui_2508 - Fe-S-cluster-containing hydrogenase subunit, at 2,655,425 to 2,656,150
_2508
Dsui_2509: Dsui_2509 - formate-dependent nitrite reductase, membrane component, at 2,656,153 to 2,657,223
_2509
Dsui_2510: Dsui_2510 - anaerobic dehydrogenase, typically selenocysteine-containing, at 2,657,235 to 2,660,321
_2510
Group
Condition
Dsui
_2506
Dsui
_2507
Dsui
_2508
Dsui
_2509
Dsui
_2510
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-1.0
-0.6
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
-1.1
-0.3
-0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-1.0
-0.5
-0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-1.1
-0.4
-0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-1.1
-0.3
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-0.9
-0.4
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-0.9
-0.3
-0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.4
-0.9
-0.4
-0.2
stress
ALP with Zinc 2 mM
N.D.
-0.7
+0.2
+0.2
-0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.6
-1.0
-0.4
+0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-0.8
-0.2
-0.2
carbon source
pyruvate (C)
N.D.
-0.3
+0.2
+0.2
-0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.6
-0.9
-0.1
-0.3
stress
ALP with Fusidic 0.007 mg/ml
N.D.
-0.3
+0.3
+0.2
-0.8
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.6
-0.8
-0.2
-0.1
carbon source
D,L-Lactate (C)
N.D.
-0.2
+0.2
+0.2
-0.8
carbon source
L-Lactate (C)
N.D.
-0.2
+0.2
+0.3
-0.8
carbon source
D-Lactate (C)
N.D.
-0.2
+0.3
+0.2
-0.7
carbon source
propionate (C)
N.D.
-0.4
+0.4
+0.3
-0.5
carbon source
propionate (C)
N.D.
-0.2
+0.4
+0.2
-0.7
carbon source
L-Lactate (C)
N.D.
-0.2
+0.3
+0.3
-0.7
carbon source
a-Ketoglutaric (C)
N.D.
-0.4
+0.5
+0.3
-0.5
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-0.1
+0.4
+0.5
-0.8
carbon source
a-Ketoglutaric (C)
N.D.
-0.3
+0.5
+0.4
-0.6
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
-0.3
+0.3
+0.5
-0.5
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
-0.2
+0.5
+0.6
-0.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.9
-0.4
+0.1
+0.1
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
-0.4
+0.5
+0.6
+0.1
stress
ALP with copper (II) chloride 0.6 mM
N.D.
-0.5
+1.2
+0.8
-0.2
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
-0.1
+0.8
+0.6
-0.1
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