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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2481 and Dsui_2482 are separated by 71 nucleotides
Dsui_2482 and Dsui_2483 overlap by 11 nucleotides
Dsui_2483 and Dsui_2484 are separated by 28 nucleotides
Dsui_2484 and Dsui_2485 are separated by 33 nucleotides
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993
_2482
Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711
_2483
Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543
_2484
Dsui_2485: Dsui_2485 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,634,577 to 2,634,942
_2485
Group
Condition
Dsui
_2481
Dsui
_2482
Dsui
_2483
Dsui
_2484
Dsui
_2485
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.6
+0.1
anaerobic
Anaero. lactate (C), nitrate electron acceptor
N.D.
N.D.
N.D.
-1.2
+0.0
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-0.5
-0.6
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-0.5
-0.6
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
-0.7
-0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-0.8
-0.1
stress
ALP with copper (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-0.0
-0.8
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
-0.4
-0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-0.9
+0.0
stress
ALP with Cobalt chloride 0.25 mM
N.D.
N.D.
N.D.
-0.4
-0.3
carbon source
R2A with sodium pyruvate
N.D.
N.D.
N.D.
-0.6
-0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-0.6
+0.1
alp rich
rich media
N.D.
N.D.
N.D.
-0.6
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-0.6
+0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
-0.5
+0.3
anaerobic
Anaero. lactate (C), nitrate electron acceptor
N.D.
N.D.
N.D.
+0.3
-0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
-0.4
+0.3
stress
ALP with perchlorate 3 mM
N.D.
N.D.
N.D.
-0.4
+0.3
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
N.D.
N.D.
+0.6
-0.1
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
N.D.
N.D.
+0.7
-0.2
alp rich
rich media
N.D.
N.D.
N.D.
+0.7
-0.2
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
+0.3
+0.4
carbon source
defined media with 30 mM sodium lactate
N.D.
N.D.
N.D.
+0.8
-0.1
carbon source
defined media with 30 mM sodium lactate
N.D.
N.D.
N.D.
+0.8
-0.1
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor
N.D.
N.D.
N.D.
+0.4
+0.4
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
+0.4
+0.4
carbon source
defined media with 30 mM sodium lactate
N.D.
N.D.
N.D.
+0.7
+0.2
stress
rich media with sodium chlorite 0.16 mM
N.D.
N.D.
N.D.
+0.9
+0.1
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
+0.6
+0.4
stress
rich media with sodium chlorite 0.16 mM
N.D.
N.D.
N.D.
+0.8
+0.3
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