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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2479 and Dsui_2480 are separated by 6 nucleotides
Dsui_2480 and Dsui_2481 overlap by 4 nucleotides
Dsui_2481 and Dsui_2482 are separated by 71 nucleotides
Dsui_2482 and Dsui_2483 overlap by 11 nucleotides
Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511
_2479
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993
_2482
Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711
_2483
Group
Condition
Dsui
_2479
Dsui
_2480
Dsui
_2481
Dsui
_2482
Dsui
_2483
stress
ALP with copper (II) chloride 0.6 mM
-1.5
-0.7
N.D.
N.D.
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
-1.2
+0.1
N.D.
N.D.
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
-0.9
-0.2
N.D.
N.D.
N.D.
stress
ALP with Zinc 1 mM
-0.1
-0.6
N.D.
N.D.
N.D.
stress
ALP with Cisplatin 0.0007 mg/ml
-0.6
-0.1
N.D.
N.D.
N.D.
stress
ALP with Zinc 2 mM
-0.2
-0.5
N.D.
N.D.
N.D.
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.3
-0.3
N.D.
N.D.
N.D.
stress
ALP with Fusidic 0.02 mg/ml
-0.8
+0.2
N.D.
N.D.
N.D.
stress
ALP with Nickel (II) chloride 1.5 mM
-0.1
-0.4
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.6
+0.2
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S)
-0.5
+0.2
N.D.
N.D.
N.D.
stress
ALP with Fusidic 0.01 mg/ml
-0.6
+0.3
N.D.
N.D.
N.D.
carbon source
R2A with sodium pyruvate
-0.5
+0.2
N.D.
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
-0.3
N.D.
N.D.
N.D.
carbon source
defined media with 30 mM sodium lactate
+0.6
-0.0
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.4
N.D.
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.1
+0.4
N.D.
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.3
N.D.
N.D.
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
+0.5
+0.1
N.D.
N.D.
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.4
+0.2
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.3
N.D.
N.D.
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.4
+0.2
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
+0.3
N.D.
N.D.
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.5
+0.2
N.D.
N.D.
N.D.
stress
rich media with sodium chlorite 0.16 mM
+0.5
+0.2
N.D.
N.D.
N.D.
stress
rich media with hydrogen peroxide 5 mM
+0.3
+0.4
N.D.
N.D.
N.D.
alp rich
rich media
+0.5
+0.3
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
+0.5
N.D.
N.D.
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.7
+0.2
N.D.
N.D.
N.D.
carbon source
defined media with 30 mM sodium lactate
+0.9
+0.2
N.D.
N.D.
N.D.
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