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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2477 and Dsui_2478 are separated by 17 nucleotides
Dsui_2478 and Dsui_2479 overlap by 4 nucleotides
Dsui_2479 and Dsui_2480 are separated by 6 nucleotides
Dsui_2480 and Dsui_2481 overlap by 4 nucleotides
Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781
_2477
Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239
_2478
Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511
_2479
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469
_2481
Group
Condition
Dsui
_2477
Dsui
_2478
Dsui
_2479
Dsui
_2480
Dsui
_2481
stress
ALP with copper (II) chloride 0.6 mM
N.D.
-0.9
-1.5
-0.7
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
-0.3
-0.9
-0.2
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
-0.2
-1.2
+0.1
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-0.8
-0.5
-0.1
N.D.
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
-0.3
-0.6
-0.1
N.D.
stress
ALP with Zinc 2 mM
N.D.
-0.2
-0.2
-0.5
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-0.3
-0.4
-0.1
N.D.
stress
ALP with Fusidic 0.02 mg/ml
N.D.
-0.2
-0.8
+0.2
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
N.D.
-0.5
-0.3
+0.1
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S)
N.D.
-0.2
-0.5
+0.2
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-0.1
-0.6
+0.2
N.D.
carbon source
R2A with sodium pyruvate
N.D.
-0.2
-0.5
+0.2
N.D.
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-0.1
-0.6
+0.3
N.D.
stress
rich media with sodium chlorite 0.16 mM
N.D.
-0.1
+0.5
+0.2
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
-0.0
+0.4
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
+0.0
+0.4
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.2
+0.1
+0.4
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
+0.2
+0.5
+0.1
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
+0.1
+0.5
+0.2
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
+0.2
+0.3
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
+0.2
+0.4
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
+0.0
+0.5
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
+0.2
+0.4
+0.2
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.4
+0.3
+0.3
N.D.
alp rich
rich media
N.D.
+0.2
+0.5
+0.3
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.5
+0.2
+0.3
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
+0.3
+0.7
+0.2
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.4
+0.4
+0.5
N.D.
carbon source
defined media with 30 mM sodium lactate
N.D.
+0.3
+0.9
+0.2
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.7
+0.4
+0.3
N.D.
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