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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2439 and Dsui_2440 are separated by 6 nucleotides
Dsui_2440 and Dsui_2441 are separated by 9 nucleotides
Dsui_2441 and Dsui_2442 are separated by 12 nucleotides
Dsui_2442 and Dsui_2443 are separated by 165 nucleotides
Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148
_2439
Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141
_2440
Dsui_2441: Dsui_2441 - putative methyltransferase, at 2,602,151 to 2,602,879
_2441
Dsui_2442: Dsui_2442 - MAF protein, at 2,602,892 to 2,603,485
_2442
Dsui_2443: Dsui_2443 - putative metal-binding protein, possibly nucleic-acid binding protein, at 2,603,651 to 2,604,142
_2443
Group
Condition
Dsui
_2439
Dsui
_2440
Dsui
_2441
Dsui
_2442
Dsui
_2443
stress
ALP with copper (II) chloride 0.6 mM
-1.4
-3.5
-1.1
-0.0
-0.3
stress
ALP with Nickel (II) chloride 1.5 mM
-0.0
-1.1
-0.5
-0.8
-3.4
stress
ALP with Cisplatin 0.0008 mg/ml
-0.5
-2.3
-0.6
-0.8
-1.5
stress
ALP with nitrite 0.45 mM
+0.1
-1.1
-0.6
-0.9
-3.1
stress
ALP with Cobalt chloride 0.25 mM
-0.0
-1.5
-0.8
-0.9
-2.0
stress
ALP with Cisplatin 0.0007 mg/ml
-0.3
-2.2
-0.5
-0.8
-1.6
carbon source
a-Ketoglutaric (C)
-0.0
-0.9
-0.7
-0.8
-2.8
carbon source
L-Lactate (C)
+0.1
-1.6
-0.4
-0.9
-2.3
stress
ALP with Cobalt chloride 0.2 mM
+0.2
-1.5
-0.6
-1.0
-2.0
stress
ALP with Zinc 2 mM
-0.2
-1.4
-0.5
-0.9
-1.9
stress
ALP with Nickel (II) chloride 3.5 mM
-0.0
-1.5
+0.0
-0.9
-2.4
carbon source
pyruvate (C)
-0.1
-1.2
-0.4
-0.7
-2.4
carbon source
D,L-Lactate (C)
+0.2
-1.5
-0.3
-1.1
-2.0
carbon source
propionate (C)
-0.3
-1.5
-0.2
-0.7
-2.1
carbon source
propionate (C)
-0.0
-1.3
-0.4
-1.0
-1.9
stress
ALP with nitrite 0.3 mM
+0.0
-1.2
-0.3
-1.0
-2.1
stress
ALP with sodium fluoride 40 mM
-0.3
-1.0
-0.5
-1.0
-1.8
stress
ALP with Bacitracin 0.2 mg/ml
+0.0
-1.1
-0.2
-1.0
-2.2
carbon source
D-Lactate (C)
+0.1
-0.9
-0.5
-1.0
-2.3
alp richb
ALP
+0.1
-1.2
-0.4
-0.8
-2.1
stress
ALP with nitrate 75 mM
+0.1
-0.8
-0.3
-0.8
-2.4
stress
ALP with Cisplatin 0.0009 mg/ml
-0.3
-1.9
-0.7
-0.8
-0.6
stress
ALP with Nickel (II) chloride 2.5 mM
+0.1
-2.1
-0.3
-0.3
-1.7
carbon source
pyruvate (C)
+0.2
-1.0
-0.3
-1.0
-2.1
stress
ALP with nitrite 0.15 mM
+0.1
-0.9
-0.4
-1.1
-1.6
stress
ALP with perchlorate 6 mM
+0.3
-0.9
-0.2
-1.0
-2.0
stress
ALP with Chloride 75 mM
+0.2
-0.8
-0.3
-1.0
-2.0
stress
ALP with Dimethyl Sulfoxide 2 vol%
+0.2
-0.9
-0.4
-0.9
-1.8
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.1
+0.3
+0.1
-3.8
stress
ALP with Fusidic 0.02 mg/ml
+0.1
-0.4
+1.1
-1.1
-2.1
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