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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2435 and Dsui_2436 are separated by 88 nucleotides
Dsui_2436 and Dsui_2437 are separated by 444 nucleotides
Dsui_2437 and Dsui_2438 overlap by 17 nucleotides
Dsui_2438 and Dsui_2439 overlap by 22 nucleotides
Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888
_2435
Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739
_2436
Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179
_2437
Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819
_2438
Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148
_2439
Group
Condition
Dsui
_2435
Dsui
_2436
Dsui
_2437
Dsui
_2438
Dsui
_2439
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.2
-1.8
-0.5
-0.0
+0.2
stress
ALP with copper (II) chloride 0.6 mM
-0.1
+0.1
+0.2
-0.9
-1.4
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.2
-1.2
-0.5
-0.1
+0.6
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.3
-0.2
-0.7
+0.2
-0.1
stress
ALP with Nickel (II) chloride 2.5 mM
+0.6
-0.2
-1.3
-0.1
+0.1
stress
ALP with Cobalt chloride 0.25 mM
+0.3
-0.3
-0.7
-0.1
-0.0
stress
ALP with Fusidic 0.02 mg/ml
+0.0
-3.0
+2.0
+0.3
+0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.3
-0.3
-0.7
+0.4
+0.2
stress
ALP with Cobalt chloride 0.2 mM
+0.2
-0.1
-0.8
-0.0
+0.2
stress
ALP with Fusidic 0.01 mg/ml
-0.2
-2.5
+1.9
+0.2
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.1
-0.2
-0.7
+0.4
+0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.1
-0.5
-0.3
-0.0
+0.5
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.0
-0.3
-0.5
+0.3
+0.3
stress
ALP with Fusidic 0.007 mg/ml
+0.0
-2.2
+2.0
+0.1
-0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.3
-0.4
+0.4
-0.0
carbon source
defined media with 30 mM sodium lactate
+0.6
-0.7
-0.0
+0.3
+0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.2
-0.5
+0.5
+0.3
carbon source
defined media with 30 mM sodium lactate
+0.3
-0.3
-0.1
+0.2
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-0.0
-0.4
+0.4
+0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-0.1
-0.4
+0.2
+0.7
stress
ALP with sodium fluoride 30 mM
+0.4
+0.6
-0.0
+0.2
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
+0.2
-0.2
+0.5
+0.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
+0.1
-0.2
+0.4
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.3
+0.9
-0.5
+0.3
+0.1
carbon source
R2A with sodium pyruvate
+0.4
+0.3
+0.1
+0.3
+0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.3
+0.1
+0.3
+0.5
+0.2
stress
ALP with perchlorate 3 mM
+0.5
+0.7
-0.3
+0.2
+0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
+1.1
-0.4
+0.4
+0.4
stress
ALP with perchlorate 6 mM
+0.4
+1.1
+0.2
+0.2
+0.3
stress
ALP with perchlorate 12 mM
+0.2
+1.4
+0.4
+0.1
+0.2
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