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Gene
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Cofit
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2428 and Dsui_2429 overlap by 4 nucleotides
Dsui_2429 and Dsui_2430 are separated by 127 nucleotides
Dsui_2430 and Dsui_2431 are separated by 54 nucleotides
Dsui_2431 and Dsui_2432 are separated by 62 nucleotides
Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583
_2428
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Dsui_2430: Dsui_2430 - tRNA-Asn, at 2,589,847 to 2,589,922
_2430
Dsui_2431: Dsui_2431 - tRNA-Asn, at 2,589,977 to 2,590,052
_2431
Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863
_2432
Group
Condition
Dsui
_2428
Dsui
_2429
Dsui
_2430
Dsui
_2431
Dsui
_2432
stress
ALP with perchlorate 3 mM
N.D.
-2.1
+0.4
N.D.
-1.3
stress
ALP with perchlorate 6 mM
N.D.
-2.1
+0.5
N.D.
-1.3
stress
ALP with Bacitracin 0.2 mg/ml
N.D.
-1.9
+0.2
N.D.
-1.1
stress
ALP with Dimethyl Sulfoxide 2 vol%
N.D.
-1.8
+0.2
N.D.
-1.1
carbon source
D,L-Lactate (C)
N.D.
-1.8
+0.1
N.D.
-1.0
carbon source
L-Lactate (C)
N.D.
-1.7
+0.0
N.D.
-1.0
stress
ALP with Chloride 75 mM
N.D.
-2.0
+0.6
N.D.
-1.2
carbon source
pyruvate (C)
N.D.
-1.8
+0.3
N.D.
-1.0
stress
ALP with perchlorate 12 mM
N.D.
-1.8
+0.6
N.D.
-1.2
carbon source
D-Lactate (C)
N.D.
-1.6
+0.1
N.D.
-0.9
carbon source
pyruvate (C)
N.D.
-1.7
+0.4
N.D.
-1.0
carbon source
D,L-Lactate (C)
N.D.
-1.7
+0.4
N.D.
-1.0
carbon source
D-Lactate (C)
N.D.
-1.5
+0.2
N.D.
-0.9
carbon source
propionate (C)
N.D.
-1.6
+0.3
N.D.
-0.8
stress
ALP with nitrite 0.15 mM
N.D.
-1.2
+0.3
N.D.
-1.2
stress
ALP with nitrite 0.3 mM
N.D.
-1.2
+0.4
N.D.
-1.2
stress
ALP with Thallium(I) acetate 0.004 mg/ml
N.D.
-1.2
+0.4
N.D.
-1.2
stress
ALP with sodium fluoride 40 mM
N.D.
-1.2
+0.3
N.D.
-1.1
stress
ALP with Thallium(I) acetate 0.002 mg/ml
N.D.
-1.3
+0.5
N.D.
-1.2
stress
ALP with nitrite 0.45 mM
N.D.
-1.2
+0.5
N.D.
-1.2
stress
ALP with Thallium(I) acetate 0.003 mg/ml
N.D.
-1.2
+0.5
N.D.
-1.2
stress
ALP with nitrate 50 mM
N.D.
-1.1
+0.4
N.D.
-1.2
stress
ALP with nitrate 75 mM
N.D.
-1.1
+0.5
N.D.
-1.1
carbon source
a-Ketoglutaric (C)
N.D.
-1.4
+0.5
N.D.
-0.6
stress
ALP with Zinc 2 mM
N.D.
-1.0
+0.8
N.D.
-1.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.9
+0.7
N.D.
-0.9
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-1.0
+0.7
N.D.
-0.8
stress
ALP with Fusidic 0.007 mg/ml
N.D.
-1.8
+1.8
N.D.
-1.0
stress
ALP with Fusidic 0.02 mg/ml
N.D.
-1.8
+2.1
N.D.
-1.0
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-1.6
+1.9
N.D.
-0.9
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Dsui_2430
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