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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2402 and Dsui_2403 are separated by 380 nucleotides
Dsui_2403 and Dsui_2404 are separated by 3 nucleotides
Dsui_2404 and Dsui_2405 overlap by 4 nucleotides
Dsui_2405 and Dsui_2406 are separated by 199 nucleotides
Dsui_2402: Dsui_2402 - hypothetical protein, at 2,554,895 to 2,555,281
_2402
Dsui_2403: Dsui_2403 - universal bacterial protein YeaZ, at 2,555,662 to 2,556,345
_2403
Dsui_2404: Dsui_2404 - ribosomal-protein-alanine acetyltransferase, at 2,556,349 to 2,556,840
_2404
Dsui_2405: Dsui_2405 - uracil-DNA glycosylase, family 4, at 2,556,837 to 2,557,694
_2405
Dsui_2406: Dsui_2406 - hypothetical protein, at 2,557,894 to 2,558,496
_2406
Group
Condition
Dsui
_2402
Dsui
_2403
Dsui
_2404
Dsui
_2405
Dsui
_2406
stress
ALP with copper (II) chloride 0.6 mM
-2.9
N.D.
-4.4
N.D.
-0.2
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-1.5
N.D.
-1.1
N.D.
-0.5
carbon source
defined media with 30 mM sodium lactate
-2.1
N.D.
-0.2
N.D.
-0.2
carbon source
R2A with sodium pyruvate
-2.0
N.D.
-0.4
N.D.
+0.1
carbon source
R2A with sodium pyruvate
-0.8
N.D.
-0.7
N.D.
-0.5
stress
ALP with Cobalt chloride 0.2 mM
-0.5
N.D.
-1.0
N.D.
-0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-2.2
N.D.
+0.3
N.D.
+0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.0
N.D.
-0.9
N.D.
+0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.3
N.D.
-0.2
N.D.
-0.2
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-1.7
N.D.
+0.0
N.D.
+0.1
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.6
N.D.
-0.7
N.D.
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-1.5
N.D.
-0.6
N.D.
+0.6
stress
ALP with Nickel (II) chloride 3.5 mM
-0.5
N.D.
-0.9
N.D.
-0.0
stress
ALP with Nickel (II) chloride 1.5 mM
-0.6
N.D.
-0.8
N.D.
+0.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.4
N.D.
-1.4
N.D.
+0.5
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.9
N.D.
-0.5
N.D.
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.0
N.D.
-1.4
N.D.
+0.3
stress
rich media with sodium chlorite 0.16 mM
-1.2
N.D.
+0.3
N.D.
+0.0
carbon source
defined media with 30 mM sodium lactate
-1.1
N.D.
-0.2
N.D.
+0.5
stress
ALP with Nickel (II) chloride 2.5 mM
-0.7
N.D.
-0.6
N.D.
+0.5
carbon source
a-Ketoglutaric (C)
+0.4
N.D.
-0.6
N.D.
-0.4
stress
rich media with sodium chlorite 0.16 mM
-0.8
N.D.
+0.3
N.D.
+0.3
stress
ALP with Fusidic 0.007 mg/ml
+3.2
N.D.
-3.0
N.D.
-0.3
stress
ALP with Fusidic 0.01 mg/ml
+3.2
N.D.
-2.9
N.D.
-0.2
stress
ALP with Fusidic 0.02 mg/ml
+3.0
N.D.
-2.7
N.D.
-0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+1.2
N.D.
-0.8
N.D.
+0.1
alp rich
rich media
+0.4
N.D.
-0.4
N.D.
+0.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.1
N.D.
+0.2
N.D.
+0.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.8
N.D.
+0.4
N.D.
+0.3
stress
ALP with Cisplatin 0.0009 mg/ml
+0.6
N.D.
+0.4
N.D.
+0.6
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