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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2394 and Dsui_2395 are separated by 19 nucleotides
Dsui_2395 and Dsui_2396 overlap by 4 nucleotides
Dsui_2396 and Dsui_2397 are separated by 112 nucleotides
Dsui_2397 and Dsui_2398 are separated by 25 nucleotides
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112
_2395
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Dsui_2397: Dsui_2397 - cAMP-binding protein, at 2,550,064 to 2,550,780
_2397
Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801
_2398
Group
Condition
Dsui
_2394
Dsui
_2395
Dsui
_2396
Dsui
_2397
Dsui
_2398
stress
ALP with sodium fluoride 40 mM
+0.1
-0.1
+0.2
-1.7
-1.7
stress
ALP with nitrite 0.15 mM
+0.2
+0.1
+0.2
-1.9
-1.7
stress
ALP with copper (II) chloride 0.6 mM
-0.3
-0.4
-0.3
-1.6
-0.5
stress
ALP with Zinc 2 mM
+0.1
+0.1
+0.1
-1.6
-1.5
stress
ALP with Cisplatin 0.0009 mg/ml
+0.1
-0.2
+0.1
-1.4
-1.2
stress
ALP with Cobalt chloride 0.25 mM
+0.3
+0.2
+0.1
-1.7
-1.4
stress
ALP with nitrite 0.45 mM
+0.2
+0.1
+0.3
-1.4
-1.7
stress
ALP with Thallium(I) acetate 0.004 mg/ml
+0.2
-0.0
+0.2
-1.2
-1.6
stress
ALP with Zinc 1 mM
+0.1
+0.1
+0.1
-1.1
-1.5
stress
ALP with Thallium(I) acetate 0.003 mg/ml
+0.2
-0.1
+0.1
-0.9
-1.7
stress
ALP with sodium fluoride 30 mM
+0.2
-0.0
+0.2
-1.1
-1.5
stress
ALP with Thallium(I) acetate 0.002 mg/ml
+0.3
+0.2
+0.3
-1.5
-1.5
stress
ALP with Cisplatin 0.0008 mg/ml
+0.3
-0.1
+0.2
-1.4
-1.2
stress
ALP with Cisplatin 0.0007 mg/ml
+0.1
-0.1
+0.1
-1.1
-1.1
stress
ALP with nitrate 50 mM
+0.3
+0.2
+0.2
-1.0
-1.7
stress
ALP with nitrate 75 mM
+0.0
+0.2
+0.2
-0.8
-1.6
alp richb
ALP
+0.2
+0.2
+0.2
-0.9
-1.6
stress
ALP with Nickel (II) chloride 3.5 mM
+0.0
+0.1
+0.4
-0.8
-1.3
stress
ALP with perchlorate 3 mM
+0.1
+0.3
+0.4
-2.0
-0.4
carbon source
D-Lactate (C)
-0.0
+0.1
+0.2
-2.0
+0.1
stress
ALP with Cobalt chloride 0.2 mM
+0.2
+0.2
+0.3
-0.8
-1.5
stress
ALP with nitrite 0.3 mM
+0.3
+0.1
+0.2
-0.4
-1.7
stress
ALP with Chloride 75 mM
+0.1
+0.2
+0.3
-1.7
-0.3
carbon source
D,L-Lactate (C)
+0.0
+0.3
+0.2
-1.9
+0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.2
+0.1
+0.1
-1.9
stress
ALP with perchlorate 6 mM
+0.2
+0.4
+0.4
-1.6
-0.3
stress
ALP with Nickel (II) chloride 2.5 mM
+0.4
+0.3
+0.4
-1.1
-0.7
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.5
+0.1
+0.2
+0.2
-1.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.5
+0.7
+0.4
+0.1
-1.7
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.6
+0.2
+0.3
+0.3
-1.2
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