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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2340 and Dsui_2341 are separated by 4 nucleotides
Dsui_2341 and Dsui_2342 are separated by 1 nucleotides
Dsui_2342 and Dsui_2343 overlap by 4 nucleotides
Dsui_2343 and Dsui_2344 are separated by 157 nucleotides
Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772
_2340
Dsui_2341: Dsui_2341 - ABC-type multidrug transport system, ATPase component, at 2,492,777 to 2,493,721
_2341
Dsui_2342: Dsui_2342 - multidrug resistance efflux pump, at 2,493,723 to 2,494,688
_2342
Dsui_2343: Dsui_2343 - transcriptional regulator, at 2,494,685 to 2,495,233
_2343
Dsui_2344: Dsui_2344 - hypothetical protein, at 2,495,391 to 2,495,612
_2344
Group
Condition
Dsui
_2340
Dsui
_2341
Dsui
_2342
Dsui
_2343
Dsui
_2344
stress
ALP with perchlorate 3 mM
-1.4
-2.2
-2.7
+0.4
+0.1
stress
ALP with perchlorate 6 mM
-1.2
-2.1
-2.6
+0.4
+0.1
stress
ALP with nitrite 0.15 mM
-0.9
-1.9
-2.7
+0.2
-0.1
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.8
-1.9
-2.7
+0.2
-0.1
stress
ALP with Bacitracin 0.2 mg/ml
-1.2
-1.9
-2.5
+0.4
-0.0
stress
ALP with Zinc 1 mM
-1.0
-1.8
-2.6
+0.4
-0.1
stress
ALP with nitrate 75 mM
-0.8
-1.9
-2.7
+0.3
+0.0
stress
ALP with Chloride 75 mM
-1.0
-2.0
-2.5
+0.5
+0.1
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.6
-1.9
-2.6
+0.3
-0.0
carbon source
L-Lactate (C)
-1.2
-1.8
-2.3
+0.3
+0.0
stress
ALP with Fusidic 0.007 mg/ml
-1.1
-1.9
-1.8
-0.1
+0.1
stress
ALP with sodium fluoride 40 mM
-0.4
-1.9
-2.7
+0.2
-0.1
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.5
-1.9
-2.7
+0.3
-0.0
stress
ALP with nitrite 0.3 mM
-0.6
-1.9
-2.7
+0.4
+0.0
carbon source
pyruvate (C)
-0.9
-1.8
-2.3
+0.3
-0.1
stress
ALP with nitrite 0.45 mM
-0.4
-1.9
-2.7
+0.3
-0.0
stress
ALP with nitrate 50 mM
-0.7
-1.9
-2.5
+0.4
-0.1
stress
ALP with perchlorate 12 mM
-1.1
-1.5
-2.5
+0.3
+0.1
carbon source
D,L-Lactate (C)
-1.1
-1.9
-2.1
+0.4
+0.0
stress
ALP with Cobalt chloride 0.2 mM
-0.8
-1.7
-2.5
+0.4
-0.1
stress
ALP with sodium fluoride 30 mM
-0.7
-1.8
-2.5
+0.2
+0.0
stress
ALP with Cobalt chloride 0.25 mM
-0.6
-1.6
-2.4
+0.3
-0.4
stress
ALP with Zinc 2 mM
-0.6
-1.7
-2.5
+0.5
-0.2
carbon source
pyruvate (C)
-0.8
-1.8
-2.3
+0.4
+0.0
carbon source
D-Lactate (C)
-0.9
-1.7
-2.2
+0.2
-0.1
carbon source
D-Lactate (C)
-0.9
-1.7
-2.2
+0.3
-0.0
stress
ALP with Fusidic 0.01 mg/ml
-0.6
-1.8
-2.4
+0.1
+0.3
stress
ALP with Dimethyl Sulfoxide 2 vol%
-1.0
-1.8
-1.8
+0.3
-0.0
alp richb
ALP
-0.8
-1.9
-2.1
+0.3
+0.1
carbon source
propionate (C)
-0.9
-1.6
-2.1
+0.5
-0.0
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