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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2332 and Dsui_2333 are separated by 10 nucleotides
Dsui_2333 and Dsui_2334 are separated by 151 nucleotides
Dsui_2334 and Dsui_2335 are separated by 29 nucleotides
Dsui_2335 and Dsui_2336 overlap by 4 nucleotides
Dsui_2332: Dsui_2332 - uracil-xanthine permease, at 2,485,682 to 2,486,923
_2332
Dsui_2333: Dsui_2333 - uracil phosphoribosyltransferase, at 2,486,934 to 2,487,560
_2333
Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674
_2334
Dsui_2335: Dsui_2335 - Integral membrane protein CcmA involved in cell shape determination, at 2,488,704 to 2,489,153
_2335
Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743
_2336
Group
Condition
Dsui
_2332
Dsui
_2333
Dsui
_2334
Dsui
_2335
Dsui
_2336
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-4.6
+0.0
-0.0
+0.4
stress
ALP with copper (II) chloride 0.6 mM
+0.3
-1.7
-0.5
-1.3
-0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.0
-2.9
+0.2
+0.3
+0.3
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
-2.9
+0.2
+0.2
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-2.5
+0.1
-0.1
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
-2.9
+0.4
+0.0
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-2.5
+0.2
+0.0
+0.4
carbon source
propionate (C)
-0.2
-1.5
-0.1
-0.3
+0.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
-2.5
+0.2
+0.0
+0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.2
-2.0
-0.1
+0.1
+0.5
stress
ALP with sodium fluoride 40 mM
-0.0
-0.8
-0.4
-0.3
+0.1
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.3
-1.6
+0.2
+0.4
+0.0
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
-2.4
+0.2
+0.1
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
-2.3
+0.3
+0.1
+0.5
stress
ALP with Fusidic 0.007 mg/ml
-0.1
-1.0
+0.1
-0.2
+0.2
alp richb
ALP
+0.1
-0.8
-0.3
-0.2
+0.2
stress
ALP with Zinc 1 mM
+0.1
-0.5
-0.4
-0.3
+0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.3
-1.9
+0.3
+0.1
+0.4
stress
ALP with Nickel (II) chloride 1.5 mM
-0.1
+0.4
-0.3
-0.4
-0.3
stress
ALP with nitrate 50 mM
+0.1
-0.7
-0.2
-0.2
+0.3
carbon source
L-Lactate (C)
+0.2
-0.5
-0.4
-0.4
+0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.2
-1.4
+0.1
-0.1
+0.5
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.3
-1.7
+0.2
+0.0
+0.4
carbon source
propionate (C)
+0.1
-1.0
-0.2
-0.0
+0.4
carbon source
R2A with sodium pyruvate
-0.2
-0.7
-0.4
+0.1
+0.5
stress
ALP with nitrate 75 mM
+0.0
-0.4
-0.1
-0.4
+0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.4
-0.5
-0.4
+0.2
+0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.1
-0.7
+0.2
+0.6
-0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.5
-0.6
-0.2
+0.7
+0.4
carbon source
defined media with 30 mM sodium lactate
+0.3
+0.6
+0.1
+0.3
+0.3
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