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Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2208 and Dsui_2209 are separated by 69 nucleotides
Dsui_2209 and Dsui_2210 are separated by 188 nucleotides
Dsui_2210 and Dsui_2211 are separated by 130 nucleotides
Dsui_2211 and Dsui_2212 overlap by 7 nucleotides
Dsui_2208: Dsui_2208 - citrate lyase beta subunit, at 2,347,100 to 2,348,107
_2208
Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163
_2209
Dsui_2210: Dsui_2210 - transcriptional regulator, at 2,349,352 to 2,350,092
_2210
Dsui_2211: Dsui_2211 - succinate dehydrogenase, cytochrome b556 subunit, at 2,350,223 to 2,350,615
_2211
Dsui_2212: Dsui_2212 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,350,609 to 2,350,956
_2212
Group
Condition
Dsui
_2208
Dsui
_2209
Dsui
_2210
Dsui
_2211
Dsui
_2212
stress
ALP with copper (II) chloride 0.6 mM
-0.7
N.D.
-1.8
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
-1.6
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
-1.5
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
-1.6
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
N.D.
-1.3
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.0
N.D.
-1.1
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
N.D.
-1.3
N.D.
N.D.
stress
ALP with Fusidic 0.007 mg/ml
-0.0
N.D.
-0.8
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
-1.2
N.D.
N.D.
stress
ALP with Fusidic 0.01 mg/ml
+0.1
N.D.
-0.9
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
-1.3
N.D.
N.D.
carbon source
propionate (C)
-0.3
N.D.
-0.5
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.4
N.D.
-1.1
N.D.
N.D.
stress
ALP with Nickel (II) chloride 1.5 mM
+0.1
N.D.
-0.8
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
N.D.
-0.7
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
-0.8
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
N.D.
-0.9
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
-0.9
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
N.D.
-0.7
N.D.
N.D.
stress
rich media with hydrogen peroxide 5 mM
+0.2
N.D.
-0.5
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
N.D.
-0.7
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
N.D.
-0.6
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.6
N.D.
-0.7
N.D.
N.D.
stress
ALP with Fusidic 0.02 mg/ml
+0.4
N.D.
-0.4
N.D.
N.D.
stress
ALP with nitrite 0.45 mM
+0.4
N.D.
-0.3
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.5
N.D.
-0.2
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.8
N.D.
-0.3
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.4
N.D.
+0.3
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.3
N.D.
+0.4
N.D.
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.5
N.D.
+2.8
N.D.
N.D.
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