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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2193 and Dsui_2194 are separated by 131 nucleotides
Dsui_2194 and Dsui_2195 are separated by 46 nucleotides
Dsui_2195 and Dsui_2196 are separated by 125 nucleotides
Dsui_2196 and Dsui_2197 are separated by 15 nucleotides
Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333
_2193
Dsui_2194: Dsui_2194 - tRNA-Leu, at 2,330,465 to 2,330,549
_2194
Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900
_2195
Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667
_2196
Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957
_2197
Group
Condition
Dsui
_2193
Dsui
_2194
Dsui
_2195
Dsui
_2196
Dsui
_2197
stress
ALP with Nickel (II) chloride 2.5 mM
-0.3
N.D.
-2.3
-5.1
-2.7
stress
ALP with Cisplatin 0.0009 mg/ml
+0.4
N.D.
-1.7
-4.8
-1.7
stress
ALP with Cisplatin 0.0008 mg/ml
+0.0
N.D.
-1.4
-4.7
-1.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.0
N.D.
+0.4
-7.2
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.1
N.D.
+0.6
-6.3
-1.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
+0.5
-7.0
-0.7
stress
ALP with copper (II) chloride 0.6 mM
+0.3
N.D.
-4.2
-1.4
-0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
+0.8
-6.5
-0.4
stress
ALP with Cisplatin 0.0007 mg/ml
+0.3
N.D.
-1.5
-3.0
-1.5
stress
ALP with Nickel (II) chloride 3.5 mM
+0.1
N.D.
-1.7
-2.9
-1.1
stress
ALP with Nickel (II) chloride 1.5 mM
-0.0
N.D.
-1.5
-3.3
-0.7
stress
ALP with Cobalt chloride 0.25 mM
+0.4
N.D.
-1.5
-1.4
-1.7
carbon source
D-Lactate (C)
+0.0
N.D.
-1.7
-1.5
-0.8
stress
ALP with Cobalt chloride 0.2 mM
+0.2
N.D.
-1.1
-2.0
-0.7
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.0
N.D.
+0.7
-3.1
-1.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.2
N.D.
+0.8
-3.4
-1.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
+0.9
-4.2
-0.4
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
+1.0
N.D.
-0.5
-1.9
-1.9
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
N.D.
+0.6
-3.3
-0.7
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
N.D.
+0.8
-3.5
-0.4
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.1
N.D.
+0.8
-2.9
-0.9
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.8
N.D.
-0.8
-2.8
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.2
N.D.
+0.8
-2.1
-1.0
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
N.D.
+0.7
-2.8
-0.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
+1.0
-3.1
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.9
N.D.
+0.9
-3.4
+0.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+1.0
N.D.
+1.3
-2.8
+0.6
stress
ALP with Fusidic 0.01 mg/ml
+2.0
N.D.
-3.8
+2.1
+1.4
stress
ALP with Fusidic 0.02 mg/ml
+1.6
N.D.
-4.1
+2.6
+1.5
stress
ALP with Fusidic 0.007 mg/ml
+1.8
N.D.
-4.1
+2.8
+1.3
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