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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2057 and Dsui_2058 overlap by 1 nucleotides
Dsui_2058 and Dsui_2059 overlap by 4 nucleotides
Dsui_2059 and Dsui_2060 overlap by 1 nucleotides
Dsui_2060 and Dsui_2061 are separated by 87 nucleotides
Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354
_2057
Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136
_2058
Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996
_2059
Dsui_2060: Dsui_2060 - branched-chain amino acid ABC-type transport system, permease component, at 2,178,996 to 2,179,877
_2060
Dsui_2061: Dsui_2061 - ABC-type branched-chain amino acid transport system, periplasmic component, at 2,179,965 to 2,181,119
_2061
Group
Condition
Dsui
_2057
Dsui
_2058
Dsui
_2059
Dsui
_2060
Dsui
_2061
stress
ALP with copper (II) chloride 0.6 mM
-0.2
-0.6
-0.9
+0.2
+0.5
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
+0.3
-0.1
-0.8
+0.6
+0.2
stress
ALP with nitrite 0.3 mM
+0.3
+0.3
+0.5
-0.6
+0.6
alp richb
ALP
+0.3
+0.2
+0.6
-0.4
+0.5
stress
ALP with Thallium(I) acetate 0.003 mg/ml
+0.4
+0.3
+0.6
-0.2
+0.4
stress
ALP with nitrate 50 mM
+0.6
+0.5
+0.3
-0.2
+0.7
stress
ALP with nitrite 0.45 mM
+0.4
+0.4
+0.6
+0.0
+0.6
stress
ALP with Thallium(I) acetate 0.004 mg/ml
+0.6
+0.4
+0.7
-0.3
+0.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
+0.6
+0.4
+0.7
+0.4
stress
ALP with perchlorate 3 mM
+0.4
+0.4
+0.4
+0.2
+0.6
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.5
+0.4
+0.3
+0.6
+0.3
stress
ALP with perchlorate 6 mM
+0.4
+0.3
+0.5
+0.3
+0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.7
+0.2
+0.5
+0.5
carbon source
propionate (C)
+0.4
+0.4
+0.4
+0.3
+0.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.6
+0.2
+0.8
+0.4
stress
ALP with Dimethyl Sulfoxide 2 vol%
+0.5
+0.4
+0.4
+0.5
+0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.7
+0.2
+0.6
+0.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.7
+0.2
+0.7
+0.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.3
+0.7
+0.2
+0.6
+0.4
carbon source
L-Lactate (C)
+0.4
+0.6
+0.5
+0.5
+0.5
stress
ALP with nitrate 75 mM
+0.5
+0.5
+0.6
-0.0
+0.8
stress
ALP with Bacitracin 0.2 mg/ml
+0.5
+0.5
+0.6
+0.3
+0.6
carbon source
a-Ketoglutaric (C)
+0.2
+0.6
+0.5
+0.6
+0.7
stress
ALP with Chloride 75 mM
+0.6
+0.4
+0.6
+0.3
+0.8
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.2
+0.8
+0.3
+0.8
+0.5
carbon source
L-Lactate (C)
+0.5
+0.4
+0.6
+0.6
+0.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.6
+0.9
+0.1
+0.7
+0.6
stress
ALP with Fusidic 0.007 mg/ml
+0.8
+1.2
+1.0
+0.4
+0.8
stress
ALP with Fusidic 0.01 mg/ml
+1.1
+1.0
+1.0
+0.4
+0.8
stress
ALP with Fusidic 0.02 mg/ml
+1.1
+1.1
+1.6
+0.9
+0.8
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