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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_2016 and Dsui_2017 overlap by 4 nucleotides
Dsui_2017 and Dsui_2018 overlap by 4 nucleotides
Dsui_2018 and Dsui_2019 are separated by 436 nucleotides
Dsui_2019 and Dsui_2020 are separated by 117 nucleotides
Dsui_2016: Dsui_2016 - hypothetical protein, at 2,129,249 to 2,130,607
_2016
Dsui_2017: Dsui_2017 - ATPase family protein associated with various cellular activities (AAA), at 2,130,604 to 2,131,719
_2017
Dsui_2018: Dsui_2018 - Mu transposase/integrase, at 2,131,716 to 2,134,370
_2018
Dsui_2019: Dsui_2019 - hypothetical protein, at 2,134,807 to 2,135,088
_2019
Dsui_2020: Dsui_2020 - hypothetical protein, at 2,135,206 to 2,136,249
_2020
Group
Condition
Dsui
_2016
Dsui
_2017
Dsui
_2018
Dsui
_2019
Dsui
_2020
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.9
-0.8
-1.0
-0.7
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.8
-0.7
-0.9
-0.6
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.8
-0.6
-0.9
-0.6
-0.2
stress
ALP with perchlorate 3 mM
-0.7
-0.7
-0.7
-0.9
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.6
-0.8
-0.6
-0.2
stress
ALP with perchlorate 6 mM
-0.7
-0.8
-0.6
-0.8
+0.1
stress
ALP with Chloride 75 mM
-0.7
-0.7
-0.6
-0.9
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-0.6
-0.8
-0.4
-0.1
stress
ALP with perchlorate 12 mM
-0.6
-0.6
-0.5
-0.7
+0.1
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.6
-0.5
-0.7
-0.4
-0.0
stress
ALP with Fusidic 0.007 mg/ml
-0.5
-0.6
-0.4
-0.6
-0.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.5
-0.4
-0.6
-0.5
-0.0
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.5
-0.6
-0.5
-0.6
+0.1
carbon source
pyruvate (C)
-0.5
-0.5
-0.4
-0.7
+0.1
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.7
+0.0
-0.6
-0.8
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-0.4
-0.7
-0.4
+0.0
stress
ALP with Bacitracin 0.2 mg/ml
-0.5
-0.6
-0.4
-0.6
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-0.3
-0.6
-0.4
+0.0
carbon source
D,L-Lactate (C)
-0.5
-0.5
-0.3
-0.6
+0.1
stress
ALP with nitrate 50 mM
-0.7
+0.1
-0.6
-0.7
+0.1
stress
ALP with nitrite 0.15 mM
-0.7
+0.0
-0.6
-0.6
+0.1
stress
ALP with nitrite 0.3 mM
-0.6
+0.0
-0.6
-0.7
+0.1
carbon source
D,L-Lactate (C)
-0.4
-0.5
-0.4
-0.5
+0.1
carbon source
L-Lactate (C)
-0.4
-0.5
-0.3
-0.6
+0.1
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.6
+0.1
-0.5
-0.7
+0.1
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.6
+0.1
-0.5
-0.7
+0.1
alp richb
ALP
-0.6
+0.1
-0.5
-0.6
+0.1
stress
ALP with nitrite 0.45 mM
-0.6
+0.2
-0.5
-0.6
+0.2
stress
ALP with nitrate 75 mM
-0.5
+0.2
-0.4
-0.6
+0.2
stress
ALP with Nickel (II) chloride 2.5 mM
+0.1
+0.8
+0.3
+0.2
+0.5
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