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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1952 and Dsui_1953 are separated by 9 nucleotides
Dsui_1953 and Dsui_1954 are separated by 3 nucleotides
Dsui_1954 and Dsui_1955 are separated by 5 nucleotides
Dsui_1955 and Dsui_1956 overlap by 4 nucleotides
Dsui_1952: Dsui_1952 - D-heptose-7- phosphate 1-kinase, at 2,063,939 to 2,064,886
_1952
Dsui_1953: Dsui_1953 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 2,064,896 to 2,065,888
_1953
Dsui_1954: Dsui_1954 - cysteine synthase B, at 2,065,892 to 2,066,791
_1954
Dsui_1955: Dsui_1955 - 3'-5' exonuclease, at 2,066,797 to 2,067,594
_1955
Dsui_1956: Dsui_1956 - Rhodanese-related sulfurtransferase, at 2,067,591 to 2,068,034
_1956
Group
Condition
Dsui
_1952
Dsui
_1953
Dsui
_1954
Dsui
_1955
Dsui
_1956
stress
ALP with copper (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-1.8
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
-1.7
+0.1
stress
ALP with sodium fluoride 30 mM
N.D.
N.D.
N.D.
-2.2
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.5
-0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.4
-0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.3
-0.2
stress
ALP with sodium fluoride 40 mM
N.D.
N.D.
N.D.
-2.1
+0.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.3
-0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.3
-0.0
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.4
+0.2
stress
rich media with hydrogen peroxide 5 mM
N.D.
N.D.
N.D.
-1.4
+0.1
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
N.D.
N.D.
-1.5
+0.4
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
N.D.
N.D.
-1.4
+0.3
carbon source
defined media with 30 mM sodium lactate
N.D.
N.D.
N.D.
-1.2
+0.3
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
N.D.
N.D.
-1.3
+0.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
-1.0
+0.3
stress
ALP with nitrite 0.15 mM
N.D.
N.D.
N.D.
-1.0
+0.5
stress
ALP with Dimethyl Sulfoxide 2 vol%
N.D.
N.D.
N.D.
-1.2
+0.7
stress
ALP with Bacitracin 0.2 mg/ml
N.D.
N.D.
N.D.
-0.9
+0.7
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
-0.8
+0.6
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
N.D.
N.D.
-0.9
+0.7
alp richb
ALP
N.D.
N.D.
N.D.
-0.8
+0.7
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
-0.7
+0.6
carbon source
D-Lactate (C)
N.D.
N.D.
N.D.
-0.7
+0.6
stress
ALP with nitrite 0.3 mM
N.D.
N.D.
N.D.
-0.7
+0.6
stress
ALP with Cobalt chloride 0.25 mM
N.D.
N.D.
N.D.
+1.0
+0.7
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
N.D.
N.D.
N.D.
+1.9
+0.2
stress
ALP with Fusidic 0.02 mg/ml
N.D.
N.D.
N.D.
+1.7
+0.5
stress
ALP with Fusidic 0.007 mg/ml
N.D.
N.D.
N.D.
+2.1
+0.3
stress
ALP with Fusidic 0.01 mg/ml
N.D.
N.D.
N.D.
+2.3
+0.5
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