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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1944 and Dsui_1945 are separated by 84 nucleotides
Dsui_1945 and Dsui_1946 overlap by 4 nucleotides
Dsui_1946 and Dsui_1947 are separated by 52 nucleotides
Dsui_1947 and Dsui_1948 are separated by 10 nucleotides
Dsui_1944: Dsui_1944 - integration host factor, beta subunit, at 2,057,255 to 2,057,557
_1944
Dsui_1945: Dsui_1945 - uncharacterized integral membrane protein, at 2,057,642 to 2,057,968
_1945
Dsui_1946: Dsui_1946 - putative N-acetylglucosaminyl transferase, at 2,057,965 to 2,059,134
_1946
Dsui_1947: Dsui_1947 - nucleotide sugar dehydrogenase, at 2,059,187 to 2,060,512
_1947
Dsui_1948: Dsui_1948 - dTDP-glucose 4,6-dehydratase, at 2,060,523 to 2,061,584
_1948
Group
Condition
Dsui
_1944
Dsui
_1945
Dsui
_1946
Dsui
_1947
Dsui
_1948
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.1
-1.9
-0.4
-4.1
N.D.
stress
ALP with Fusidic 0.02 mg/ml
-2.1
-1.9
-1.3
-2.9
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.6
-1.4
-0.1
-4.1
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-2.1
-1.6
-0.3
-4.1
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.9
-1.5
-0.3
-4.3
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.7
-1.3
-0.1
-4.5
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.8
-1.5
-0.2
-4.1
N.D.
stress
ALP with Fusidic 0.007 mg/ml
-2.1
-2.0
-1.7
-1.8
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.9
-1.1
-0.1
-4.4
N.D.
stress
ALP with Fusidic 0.01 mg/ml
-1.8
-2.0
-1.3
-2.4
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.0
-1.4
-0.2
-3.5
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.7
-1.3
-0.2
-3.7
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.8
-1.5
+0.0
-3.1
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-1.2
-0.9
+0.0
-4.3
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.1
-1.3
-0.3
-2.3
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-1.1
-0.5
+0.2
-3.5
N.D.
stress
ALP with copper (II) chloride 0.6 mM
-1.7
+0.3
+0.1
-3.6
N.D.
stress
ALP with Bacitracin 0.2 mg/ml
-0.7
+0.6
+0.7
-5.0
N.D.
carbon source
defined media with 30 mM sodium lactate
-0.5
-0.1
-0.3
-3.7
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.6
-1.1
+0.0
-1.5
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.8
-2.3
-0.6
-0.5
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.5
-0.7
+0.1
-2.0
N.D.
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-1.8
-1.5
-0.4
-0.3
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.3
-0.5
-0.1
-2.1
N.D.
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.2
+0.0
+0.5
-4.3
N.D.
stress
ALP with Nickel (II) chloride 3.5 mM
-0.6
+0.0
+0.1
-3.4
N.D.
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.2
+0.3
+0.5
-4.3
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
-0.6
-1.1
+0.3
-2.3
N.D.
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.1
-0.1
+0.3
-3.7
N.D.
carbon source
a-Ketoglutaric (C)
-0.5
-0.3
+0.7
-2.4
N.D.
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