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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1921 and Dsui_1922 are separated by 14 nucleotides
Dsui_1922 and Dsui_1923 are separated by 609 nucleotides
Dsui_1923 and Dsui_1924 overlap by 4 nucleotides
Dsui_1924 and Dsui_1925 are separated by 984 nucleotides
Dsui_1921: Dsui_1921 - biopolymer transport protein, at 2,026,504 to 2,027,112
_1921
Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406
_1922
Dsui_1923: Dsui_1923 - ribonucleotide reductase, beta subunit, at 2,030,016 to 2,031,200
_1923
Dsui_1924: Dsui_1924 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,031,197 to 2,034,043
_1924
Dsui_1925: Dsui_1925 - acetolactate synthase, large subunit, biosynthetic type, at 2,035,028 to 2,036,746
_1925
Group
Condition
Dsui
_1921
Dsui
_1922
Dsui
_1923
Dsui
_1924
Dsui
_1925
stress
ALP with Nickel (II) chloride 1.5 mM
N.D.
-0.6
-2.6
-2.3
-0.8
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
-0.1
-3.1
-2.7
+0.1
stress
ALP with Nickel (II) chloride 3.5 mM
N.D.
-0.5
-2.2
-2.0
-0.7
stress
ALP with nitrite 0.45 mM
N.D.
-0.8
-1.1
-1.0
-0.7
stress
ALP with copper (II) chloride 0.6 mM
N.D.
+0.2
-1.1
-0.9
-1.2
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-1.2
-0.9
-0.5
-0.1
stress
ALP with Fusidic 0.02 mg/ml
N.D.
-1.1
-0.8
-0.5
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
-0.9
+0.3
+0.5
-1.6
carbon source
propionate (C)
N.D.
-1.1
+0.2
+0.2
-1.1
carbon source
propionate (C)
N.D.
-0.9
+0.1
+0.3
-1.1
carbon source
L-Lactate (C)
N.D.
-1.1
+0.3
+0.3
-1.1
carbon source
defined media with 40 mM sodium acetate
N.D.
-0.3
+0.1
+0.2
-1.7
carbon source
pyruvate (C)
N.D.
-1.1
+0.2
+0.3
-0.9
carbon source
defined media with 40 mM sodium acetate
N.D.
-0.6
+0.3
+0.2
-1.4
carbon source
D-Lactate (C)
N.D.
-1.0
+0.1
+0.4
-0.9
stress
ALP with nitrite 0.15 mM
N.D.
-0.9
+0.3
+0.3
-1.1
carbon source
D,L-Lactate (C)
N.D.
-1.1
+0.2
+0.5
-0.8
stress
ALP with Zinc 2 mM
N.D.
-0.6
+0.6
+0.5
-1.6
stress
ALP with perchlorate 3 mM
N.D.
-1.5
+0.3
+0.6
-0.6
stress
ALP with Zinc 1 mM
N.D.
-0.5
+0.3
+0.4
-1.3
carbon source
L-Lactate (C)
N.D.
-1.0
+0.2
+0.5
-0.7
stress
ALP with perchlorate 6 mM
N.D.
-1.5
+0.3
+0.4
-0.2
stress
ALP with Chloride 75 mM
N.D.
-1.4
+0.5
+0.6
-0.7
carbon source
a-Ketoglutaric (C)
N.D.
-0.4
+0.5
+0.6
-1.6
stress
ALP with Thallium(I) acetate 0.002 mg/ml
N.D.
-0.6
+0.3
+0.4
-1.0
stress
ALP with Dimethyl Sulfoxide 2 vol%
N.D.
-0.6
+0.3
+0.5
-1.0
alp richb
ALP
N.D.
-0.8
+0.4
+0.5
-0.8
stress
ALP with Cobalt chloride 0.25 mM
N.D.
-0.5
+0.5
+0.6
-0.8
stress
ALP with nitrate 50 mM
N.D.
-0.9
+0.6
+0.7
-0.5
stress
ALP with nitrate 75 mM
N.D.
-0.7
+0.7
+0.7
-0.6
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