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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1897 and Dsui_1898 overlap by 13 nucleotides
Dsui_1898 and Dsui_1899 are separated by 192 nucleotides
Dsui_1899 and Dsui_1900 are separated by 77 nucleotides
Dsui_1900 and Dsui_1901 are separated by 375 nucleotides
Dsui_1897: Dsui_1897 - hypothetical protein, at 1,997,222 to 1,997,356
_1897
Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252
_1898
Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206
_1899
Dsui_1900: Dsui_1900 - hypothetical protein, at 1,999,284 to 1,999,850
_1900
Dsui_1901: Dsui_1901 - peroxiredoxin, at 2,000,226 to 2,000,795
_1901
Group
Condition
Dsui
_1897
Dsui
_1898
Dsui
_1899
Dsui
_1900
Dsui
_1901
stress
ALP with copper (II) chloride 0.6 mM
-1.7
-0.6
-0.1
+0.2
-1.2
stress
ALP with Cobalt chloride 0.25 mM
-1.0
+0.3
-1.7
-0.5
+0.2
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-1.4
-0.5
-0.7
+0.2
+0.1
stress
rich media with sodium chlorite 0.16 mM
-1.1
-0.0
-0.1
-0.6
+0.0
stress
ALP with Nickel (II) chloride 1.5 mM
-0.9
+0.2
-0.4
-0.6
-0.1
stress
ALP with Cobalt chloride 0.2 mM
-0.2
+0.2
-1.4
-0.7
+0.3
stress
ALP with Cisplatin 0.0009 mg/ml
-1.4
+0.2
+0.5
-0.5
+0.2
carbon source
L-Lactate (C)
-0.9
+0.1
+0.1
-0.6
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
-0.6
+0.3
-1.1
-0.0
+0.4
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.6
+0.2
+0.2
-0.9
+0.2
stress
ALP with perchlorate 12 mM
-0.5
+0.2
+0.1
-1.0
+0.4
stress
ALP with Nickel (II) chloride 3.5 mM
-0.5
+0.3
-0.3
-0.5
+0.3
stress
ALP with nitrate 75 mM
-0.6
+0.2
+0.1
-0.8
+0.5
stress
ALP with nitrite 0.15 mM
-0.3
+0.3
-0.1
-0.9
+0.3
stress
ALP with nitrite 0.3 mM
-0.3
+0.4
+0.2
-0.9
+0.4
stress
ALP with Bacitracin 0.2 mg/ml
-0.3
+0.2
+0.3
-0.8
+0.5
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.2
+0.2
+0.3
-0.8
+0.4
stress
ALP with Thallium(I) acetate 0.004 mg/ml
+0.4
+0.2
+0.1
-0.9
+0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.9
-0.0
+0.1
-0.9
+0.1
stress
ALP with sodium fluoride 40 mM
+0.7
+0.3
+0.1
-0.8
+0.0
stress
ALP with Zinc 1 mM
+0.2
+0.1
+0.3
-0.8
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.8
+0.2
+0.1
-0.5
-0.3
stress
ALP with Chloride 75 mM
-0.1
+0.5
+0.3
-0.9
+0.6
stress
ALP with Fusidic 0.007 mg/ml
-0.6
+0.1
+1.5
-0.8
+0.3
stress
ALP with perchlorate 3 mM
+0.5
+0.3
+0.1
-1.1
+0.5
stress
ALP with perchlorate 6 mM
+0.5
+0.2
+0.2
-1.1
+0.5
stress
ALP with nitrate 50 mM
+0.7
+0.4
+0.2
-0.9
+0.5
stress
ALP with Cisplatin 0.0008 mg/ml
+0.5
+0.5
+0.3
-0.5
+0.3
stress
ALP with Fusidic 0.02 mg/ml
+0.5
+0.0
+1.4
-0.8
+0.5
stress
ALP with Fusidic 0.01 mg/ml
+0.2
+0.2
+1.7
-0.5
+0.7
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