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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1886 and Dsui_1887 overlap by 4 nucleotides
Dsui_1887 and Dsui_1888 overlap by 17 nucleotides
Dsui_1888 and Dsui_1889 are separated by 1 nucleotides
Dsui_1889 and Dsui_1890 overlap by 4 nucleotides
Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689
_1886
Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896
_1887
Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743
_1888
Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068
_1889
Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605
_1890
Group
Condition
Dsui
_1886
Dsui
_1887
Dsui
_1888
Dsui
_1889
Dsui
_1890
stress
ALP with nitrite 0.45 mM
-1.2
-0.4
-1.9
N.D.
-0.7
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.8
-0.4
-1.9
N.D.
-1.0
stress
ALP with Zinc 1 mM
-0.5
-0.3
-1.8
N.D.
-1.2
stress
ALP with perchlorate 6 mM
-0.1
-1.2
-2.1
N.D.
-0.4
stress
ALP with Chloride 75 mM
-0.4
-1.0
-2.0
N.D.
-0.3
stress
ALP with nitrite 0.15 mM
-0.9
-0.4
-1.9
N.D.
-0.5
carbon source
pyruvate (C)
-0.6
-0.8
-1.8
N.D.
-0.4
stress
ALP with nitrite 0.3 mM
-0.7
-0.4
-1.9
N.D.
-0.7
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.6
-0.3
-1.8
N.D.
-0.9
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.3
-0.9
-1.8
N.D.
-0.5
stress
ALP with nitrate 50 mM
-0.3
-0.4
-1.9
N.D.
-0.9
alp richb
ALP
-0.5
-0.2
-1.9
N.D.
-0.9
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.6
-0.5
-1.9
N.D.
-0.4
stress
ALP with sodium fluoride 40 mM
-0.3
-0.4
-1.8
N.D.
-0.9
carbon source
L-Lactate (C)
-0.3
-0.8
-1.7
N.D.
-0.6
stress
ALP with nitrate 75 mM
-0.1
-0.3
-1.8
N.D.
-1.1
stress
ALP with Bacitracin 0.2 mg/ml
-0.7
-1.0
-1.1
N.D.
-0.5
stress
ALP with perchlorate 3 mM
-0.2
-1.1
-2.1
N.D.
+0.2
carbon source
D,L-Lactate (C)
-0.0
-0.9
-1.8
N.D.
-0.4
stress
ALP with Zinc 2 mM
-0.9
-0.1
-1.7
N.D.
-0.5
stress
ALP with Nickel (II) chloride 1.5 mM
-1.0
-0.2
-1.5
N.D.
-0.4
stress
ALP with Cobalt chloride 0.25 mM
-0.4
-0.1
-1.5
N.D.
-1.0
stress
ALP with Cobalt chloride 0.2 mM
-0.3
-0.3
-1.7
N.D.
-0.8
stress
ALP with Cisplatin 0.0008 mg/ml
-0.7
-0.1
-1.6
N.D.
-0.7
carbon source
L-Lactate (C)
+0.2
-0.8
-1.7
N.D.
-0.5
stress
ALP with perchlorate 12 mM
+0.2
-1.2
-1.6
N.D.
-0.3
stress
ALP with Fusidic 0.007 mg/ml
+0.2
-0.7
-1.9
N.D.
-0.4
stress
ALP with Fusidic 0.01 mg/ml
+0.5
-0.8
-1.8
N.D.
-0.2
stress
ALP with copper (II) chloride 0.6 mM
-1.4
+0.7
-0.9
N.D.
-0.3
carbon source
D-Lactate (C)
+0.2
-0.7
-1.7
N.D.
+0.4
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