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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1717 and Dsui_1718 are separated by 21 nucleotides
Dsui_1718 and Dsui_1719 are separated by 18 nucleotides
Dsui_1719 and Dsui_1720 are separated by 3 nucleotides
Dsui_1720 and Dsui_1721 are separated by 12 nucleotides
Dsui_1717: Dsui_1717 - chemotaxis signal transduction protein, at 1,807,005 to 1,807,973
_1717
Dsui_1718: Dsui_1718 - chemotaxis signal transduction protein, at 1,807,995 to 1,808,933
_1718
Dsui_1719: Dsui_1719 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,808,952 to 1,809,344
_1719
Dsui_1720: Dsui_1720 - chemotaxis protein, at 1,809,348 to 1,810,214
_1720
Dsui_1721: Dsui_1721 - chemotaxis protein histidine kinase-like protein, at 1,810,227 to 1,812,116
_1721
Group
Condition
Dsui
_1717
Dsui
_1718
Dsui
_1719
Dsui
_1720
Dsui
_1721
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.6
-0.4
-0.6
-0.1
-0.3
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.1
+0.1
-0.1
-0.3
-0.4
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.3
-0.1
-0.2
+0.1
-0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.2
+0.2
-0.2
-0.4
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.1
+0.2
+0.0
-0.4
-0.3
stress
ALP with Nickel (II) chloride 3.5 mM
+0.3
+0.1
-0.3
-0.1
+0.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.2
+0.2
+0.1
-0.2
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.1
+0.1
+0.3
-0.1
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
+0.2
+0.1
+0.0
-0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
+0.3
-0.0
+0.1
+0.2
carbon source
D,L-Lactate (C)
+0.2
+0.1
+0.4
-0.0
+0.2
stress
ALP with Bacitracin 0.2 mg/ml
+0.2
+0.2
+0.3
+0.0
+0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.3
+0.4
+0.1
-0.1
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.2
+0.1
+0.0
+0.1
carbon source
R2A with sodium pyruvate
+0.4
+0.1
+0.2
-0.1
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.3
+0.1
+0.1
+0.2
stress
ALP with Cisplatin 0.0008 mg/ml
+0.3
+0.1
+0.3
+0.2
+0.1
stress
ALP with Dimethyl Sulfoxide 2 vol%
+0.3
+0.1
+0.3
-0.0
+0.2
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.0
+0.2
+0.3
+0.3
+0.3
carbon source
L-Lactate (C)
+0.3
+0.2
+0.2
+0.1
+0.2
alp rich
rich media
+0.1
+0.3
+0.1
+0.3
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.4
-0.0
+0.1
+0.3
carbon source
defined media with 40 mM sodium acetate
+0.1
+0.3
+0.1
+0.5
+0.2
carbon source
a-Ketoglutaric (C)
+0.3
+0.3
+0.3
+0.1
+0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
+0.6
+0.3
+0.0
+0.3
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.5
+0.1
+0.3
+0.3
stress
ALP with Cisplatin 0.0007 mg/ml
+0.3
+0.2
+0.3
+0.6
+0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.4
+0.4
+0.5
+0.2
+0.3
stress
ALP with Zinc 2 mM
+0.5
+0.3
+0.5
+0.3
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
+0.7
+0.4
+0.0
+0.4
+0.6
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