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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1579 and Dsui_1580 are separated by 186 nucleotides
Dsui_1580 and Dsui_1581 are separated by 4 nucleotides
Dsui_1581 and Dsui_1582 are separated by 186 nucleotides
Dsui_1582 and Dsui_1583 are separated by 65 nucleotides
Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357
_1579
Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249
_1580
Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904
_1581
Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819
_1582
Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297
_1583
Group
Condition
Dsui
_1579
Dsui
_1580
Dsui
_1581
Dsui
_1582
Dsui
_1583
carbon source
L-Lactate (C)
-1.5
-1.1
-6.0
-3.3
-4.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-3.8
-3.3
-5.0
-3.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-4.0
-2.7
-5.4
-1.9
carbon source
L-Lactate (C)
-1.1
-1.3
-3.8
-3.1
-5.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-4.0
-3.3
-3.9
-2.3
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-4.5
-3.1
-3.5
-2.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-3.4
-3.1
-4.3
-1.7
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.3
-3.9
-3.5
-2.9
-1.8
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.3
-5.4
-3.1
-2.2
-0.9
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.6
-3.4
-3.4
-3.1
-1.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.3
-3.6
-3.4
-2.9
-1.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.4
-3.6
-3.6
-2.3
-1.7
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.2
-4.9
-3.1
-2.3
-0.9
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.2
-1.0
-7.2
-1.0
-0.6
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.1
-0.9
-7.0
-1.1
-0.6
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.4
-0.9
-6.8
-0.7
-0.6
carbon source
defined media with 30 mM sodium lactate
-0.6
-0.4
-6.2
-0.8
-0.8
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.0
+0.0
-6.5
-1.0
-0.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.5
-2.4
-3.3
-1.2
-0.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.6
-2.6
-2.6
-1.2
-0.9
carbon source
D-Lactate (C)
-1.5
-1.1
-5.9
+0.4
+0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.2
-0.7
-5.0
-1.1
-0.5
carbon source
D,L-Lactate (C)
-1.5
-1.1
-3.3
-0.7
-0.8
carbon source
defined media with 30 mM sodium lactate
-0.6
-0.6
-4.7
-0.6
-0.8
carbon source
D-Lactate (C)
-0.5
-1.4
-5.9
+0.3
+0.3
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
-0.1
-7.6
+0.1
+0.3
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.0
-0.0
-4.7
-0.9
-0.8
carbon source
defined media with 30 mM sodium lactate
-1.0
-0.7
-3.3
-0.7
-0.6
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-1.4
-0.0
-4.0
-0.8
+0.1
stress
ALP with copper (II) chloride 0.6 mM
+0.2
-3.2
+2.0
-1.0
-0.5
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