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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1515 and Dsui_1516 are separated by 70 nucleotides
Dsui_1516 and Dsui_1517 are separated by 19 nucleotides
Dsui_1517 and Dsui_1518 are separated by 4 nucleotides
Dsui_1518 and Dsui_1519 are separated by 33 nucleotides
Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418
_1515
Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151
_1516
Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854
_1517
Dsui_1518: Dsui_1518 - putative permease, at 1,580,859 to 1,581,980
_1518
Dsui_1519: Dsui_1519 - phosphoribosylaminoimidazole synthetase, at 1,582,014 to 1,583,063
_1519
Group
Condition
Dsui
_1515
Dsui
_1516
Dsui
_1517
Dsui
_1518
Dsui
_1519
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.7
N.D.
N.D.
+0.1
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.2
N.D.
N.D.
+0.1
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-2.4
N.D.
N.D.
+0.3
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.2
N.D.
N.D.
+0.2
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-2.3
N.D.
N.D.
+0.3
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-2.4
N.D.
N.D.
+0.4
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.2
N.D.
N.D.
+0.3
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-2.1
N.D.
N.D.
+0.3
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.2
N.D.
N.D.
+0.4
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-2.0
N.D.
N.D.
+0.4
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.8
N.D.
N.D.
+0.3
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.9
N.D.
N.D.
+0.4
N.D.
stress
ALP with copper (II) chloride 0.6 mM
-1.4
N.D.
N.D.
-0.1
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-1.9
N.D.
N.D.
+0.6
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-1.1
N.D.
N.D.
-0.0
N.D.
stress
ALP with sodium fluoride 30 mM
-1.3
N.D.
N.D.
+0.1
N.D.
carbon source
propionate (C)
-1.0
N.D.
N.D.
-0.2
N.D.
carbon source
propionate (C)
-1.0
N.D.
N.D.
-0.1
N.D.
carbon source
defined media with 30 mM sodium lactate
-1.0
N.D.
N.D.
+0.0
N.D.
carbon source
R2A with sodium pyruvate
-0.2
N.D.
N.D.
-0.7
N.D.
carbon source
defined media with 30 mM sodium lactate
-0.3
N.D.
N.D.
-0.5
N.D.
stress
ALP with sodium fluoride 40 mM
-0.8
N.D.
N.D.
+0.0
N.D.
stress
ALP with nitrate 50 mM
-0.8
N.D.
N.D.
+0.2
N.D.
stress
rich media with sodium chlorite 0.16 mM
-0.7
N.D.
N.D.
+0.2
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.6
N.D.
N.D.
-0.3
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.7
N.D.
N.D.
-0.2
N.D.
stress
ALP with Fusidic 0.007 mg/ml
+1.0
N.D.
N.D.
-0.1
N.D.
stress
ALP with Fusidic 0.01 mg/ml
+1.4
N.D.
N.D.
-0.2
N.D.
stress
ALP with Fusidic 0.02 mg/ml
+1.3
N.D.
N.D.
-0.1
N.D.
stress
ALP with Cobalt chloride 0.25 mM
+1.1
N.D.
N.D.
+0.3
N.D.
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