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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1432 and Dsui_1433 are separated by 8 nucleotides
Dsui_1433 and Dsui_1434 overlap by 1 nucleotides
Dsui_1434 and Dsui_1435 overlap by 1 nucleotides
Dsui_1435 and Dsui_1436 are separated by 12 nucleotides
Dsui_1432: Dsui_1432 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,486,202 to 1,487,329
_1432
Dsui_1433: Dsui_1433 - chemotaxis protein, at 1,487,338 to 1,487,835
_1433
Dsui_1434: Dsui_1434 - methylase of chemotaxis methyl-accepting protein, at 1,487,835 to 1,488,647
_1434
Dsui_1435: Dsui_1435 - chemotaxis signal transduction protein, at 1,488,647 to 1,489,204
_1435
Dsui_1436: Dsui_1436 - methyl-accepting chemotaxis protein, at 1,489,217 to 1,490,839
_1436
Group
Condition
Dsui
_1432
Dsui
_1433
Dsui
_1434
Dsui
_1435
Dsui
_1436
stress
ALP with Fusidic 0.02 mg/ml
-0.2
-1.9
-0.2
-0.5
+0.0
stress
ALP with Fusidic 0.007 mg/ml
-0.3
-1.9
+0.2
-0.5
+0.2
stress
ALP with perchlorate 12 mM
-0.1
-1.9
+0.2
-0.4
+0.1
carbon source
defined media with 30 mM sodium lactate
-0.2
-0.7
-0.4
-0.8
-0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-0.6
-0.1
-0.6
-0.5
stress
ALP with Fusidic 0.01 mg/ml
-0.3
-1.9
+0.3
-0.1
+0.0
carbon source
D,L-Lactate (C)
-0.1
-1.8
-0.0
-0.1
+0.1
stress
ALP with perchlorate 6 mM
-0.0
-2.0
-0.0
-0.1
+0.2
carbon source
pyruvate (C)
-0.0
-1.8
+0.2
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
-0.1
-1.5
+0.2
-0.4
+0.1
stress
ALP with Bacitracin 0.2 mg/ml
-0.1
-2.0
+0.1
-0.0
+0.3
carbon source
D-Lactate (C)
+0.0
-1.7
+0.1
-0.4
+0.2
stress
ALP with Chloride 75 mM
+0.1
-2.0
+0.3
-0.2
+0.2
carbon source
L-Lactate (C)
-0.1
-1.8
-0.0
-0.1
+0.4
carbon source
L-Lactate (C)
-0.0
-1.7
+0.0
-0.2
+0.3
stress
ALP with perchlorate 3 mM
+0.1
-2.0
+0.1
+0.0
+0.2
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.2
-1.8
+0.2
-0.1
+0.3
carbon source
pyruvate (C)
-0.1
-1.8
+0.2
-0.1
+0.2
carbon source
propionate (C)
-0.1
-1.6
+0.1
-0.2
+0.2
carbon source
D,L-Lactate (C)
-0.0
-1.8
-0.1
+0.2
+0.2
carbon source
D-Lactate (C)
-0.0
-1.7
+0.2
-0.3
+0.4
carbon source
propionate (C)
+0.0
-1.7
+0.1
+0.0
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
-1.6
+0.1
+0.2
+0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.3
+1.1
+0.1
-0.6
-0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.1
+0.9
-0.8
-0.0
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.7
+0.2
+0.4
+0.5
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.6
-0.0
+0.6
+0.8
-0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.2
-0.3
+0.4
+0.4
+0.7
stress
ALP with Nickel (II) chloride 2.5 mM
+0.7
-0.1
+0.5
+0.0
+0.5
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.2
+0.7
+0.6
+0.9
-0.1
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