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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1371 and Dsui_1372 are separated by 9 nucleotides
Dsui_1372 and Dsui_1373 are separated by 142 nucleotides
Dsui_1373 and Dsui_1374 are separated by 218 nucleotides
Dsui_1374 and Dsui_1375 are separated by 36 nucleotides
Dsui_1371: Dsui_1371 - transcriptional regulator, at 1,424,355 to 1,425,254
_1371
Dsui_1372: Dsui_1372 - methyl-accepting chemotaxis protein, at 1,425,264 to 1,426,883
_1372
Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988
_1373
Dsui_1374: Dsui_1374 - Protein of unknown function (DUF540), at 1,431,207 to 1,431,974
_1374
Dsui_1375: Dsui_1375 - putative nuleotide-utilizing enzyme, moeA, at 1,432,011 to 1,432,799
_1375
Group
Condition
Dsui
_1371
Dsui
_1372
Dsui
_1373
Dsui
_1374
Dsui
_1375
stress
ALP with Fusidic 0.01 mg/ml
-0.1
+0.2
-3.2
-0.1
-0.2
stress
ALP with Fusidic 0.007 mg/ml
-0.2
+0.1
-3.0
-0.1
-0.1
stress
ALP with Fusidic 0.02 mg/ml
-0.0
+0.3
-3.2
-0.2
+0.1
stress
ALP with copper (II) chloride 0.6 mM
-0.1
-0.3
-1.0
-1.2
-0.5
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.4
-0.4
-0.5
-0.1
-0.8
carbon source
a-Ketoglutaric (C)
-0.0
-0.1
-0.5
-0.4
-0.9
carbon source
propionate (C)
-0.0
-0.2
-0.2
-0.6
-0.5
carbon source
D-Lactate (C)
-0.1
-0.2
-0.4
-0.3
-0.6
carbon source
pyruvate (C)
-0.0
-0.2
-0.3
-0.4
-0.4
carbon source
pyruvate (C)
-0.1
-0.4
-0.4
-0.3
-0.2
carbon source
L-Lactate (C)
-0.1
-0.1
-0.3
-0.2
-0.5
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.1
-0.0
-0.3
-0.4
-0.4
stress
ALP with Bacitracin 0.2 mg/ml
-0.1
-0.3
-0.4
-0.6
+0.1
stress
ALP with Zinc 2 mM
+0.0
-0.6
-0.2
-0.3
-0.2
stress
ALP with perchlorate 3 mM
-0.2
-0.1
-0.3
-0.6
-0.2
stress
ALP with Cobalt chloride 0.25 mM
+0.1
-0.3
-0.8
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.1
-0.3
-0.3
-0.3
-0.3
stress
rich media with sodium chlorite 0.16 mM
-0.5
-0.2
-0.3
-0.3
+0.1
stress
ALP with Cobalt chloride 0.2 mM
+0.1
-0.3
-0.7
-0.4
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
+0.5
-0.1
-0.4
-1.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.4
-0.0
-0.2
-1.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-0.2
-0.4
-0.2
+0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
+0.3
-0.0
-0.3
-1.0
carbon source
defined media with 30 mM sodium lactate
-0.3
-0.3
-0.1
-0.1
+0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.3
-0.2
-0.3
-0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.2
+0.1
-0.3
-0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
+0.4
-0.0
-0.2
-0.5
carbon source
defined media with 40 mM sodium acetate
-0.5
-0.1
-0.0
+0.2
+0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
+0.5
+0.1
-0.2
+0.0
carbon source
R2A with sodium pyruvate
+0.5
-0.1
-0.0
-0.1
+0.7
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