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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1287 and Dsui_1288 are separated by 67 nucleotides
Dsui_1288 and Dsui_1289 are separated by 9 nucleotides
Dsui_1289 and Dsui_1290 overlap by 4 nucleotides
Dsui_1290 and Dsui_1291 are separated by 17 nucleotides
Dsui_1287: Dsui_1287 - hypothetical protein, at 1,346,703 to 1,351,481
_1287
Dsui_1288: Dsui_1288 - hypothetical protein, at 1,351,549 to 1,352,496
_1288
Dsui_1289: Dsui_1289 - hypothetical protein, at 1,352,506 to 1,353,204
_1289
Dsui_1290: Dsui_1290 - hypothetical protein, at 1,353,201 to 1,353,854
_1290
Dsui_1291: Dsui_1291 - hypothetical protein, at 1,353,872 to 1,354,240
_1291
Group
Condition
Dsui
_1287
Dsui
_1288
Dsui
_1289
Dsui
_1290
Dsui
_1291
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-2.5
-2.5
-2.3
-2.7
-2.8
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-2.5
-2.2
-2.5
-2.5
-2.9
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-2.5
-2.3
-2.3
-2.6
-2.8
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-2.6
-2.4
-2.4
-2.4
-2.7
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.4
-2.5
-2.1
-2.4
-2.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-2.4
-2.3
-2.0
-2.7
-2.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.4
-2.4
-2.1
-2.6
-1.9
No stressor control+ 10 mM ClO4 and 20 mM lactate
-2.4
-2.5
-2.0
-2.3
-1.9
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.3
-2.3
-2.0
-2.3
-1.9
No stressor control+ 10 mM ClO4 and 20 mM lactate
-2.4
-2.2
-2.1
-2.3
-1.8
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.2
-1.9
-1.9
-1.8
-2.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.3
-2.1
-1.8
-2.6
-1.5
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.1
-2.0
-1.8
-1.9
-1.6
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-2.0
-2.0
-1.8
-2.0
-1.7
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-1.7
-1.9
-1.5
-1.7
-1.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.5
-1.3
-1.3
-1.5
-1.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.4
-1.4
-1.3
-1.1
-1.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.9
-0.9
-0.9
-0.9
-0.9
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.8
-0.8
-0.8
-0.8
-1.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.8
-0.6
-0.8
-0.7
-0.9
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.7
-0.8
-0.5
-0.6
-1.0
stress
ALP with Nickel (II) chloride 2.5 mM
+0.5
+0.6
+0.7
+0.7
+0.8
carbon source
pyruvate (C)
+0.6
+0.6
+0.8
+0.4
+0.9
carbon source
D,L-Lactate (C)
+0.6
+0.7
+0.7
+0.4
+0.9
carbon source
D-Lactate (C)
+0.6
+0.7
+0.9
+0.4
+0.8
carbon source
L-Lactate (C)
+0.6
+0.7
+0.8
+0.5
+0.9
carbon source
pyruvate (C)
+0.6
+0.7
+0.8
+0.5
+0.9
stress
ALP with copper (II) chloride 0.6 mM
+0.4
+0.8
+0.9
+0.8
+0.7
carbon source
propionate (C)
+0.8
+0.9
+1.1
+0.7
+1.2
carbon source
propionate (C)
+0.8
+1.0
+1.1
+0.8
+1.2
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