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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1274 and Dsui_1275 are separated by 36 nucleotides
Dsui_1275 and Dsui_1276 are separated by 25 nucleotides
Dsui_1276 and Dsui_1277 are separated by 14 nucleotides
Dsui_1277 and Dsui_1278 are separated by 12 nucleotides
Dsui_1274: Dsui_1274 - Glutaredoxin, GrxC family, at 1,337,009 to 1,337,275
_1274
Dsui_1275: Dsui_1275 - protein-export chaperone SecB, at 1,337,312 to 1,337,776
_1275
Dsui_1276: Dsui_1276 - hypothetical protein, at 1,337,802 to 1,338,275
_1276
Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285
_1277
Dsui_1278: Dsui_1278 - putative rRNA methylase SpoU family, at 1,339,298 to 1,339,762
_1278
Group
Condition
Dsui
_1274
Dsui
_1275
Dsui
_1276
Dsui
_1277
Dsui
_1278
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.0
-6.7
-0.0
N.D.
-0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+1.3
-7.3
+0.1
N.D.
-0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+1.2
-6.7
+0.2
N.D.
-0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
+1.2
-7.1
+0.1
N.D.
-0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.0
-6.3
+0.1
N.D.
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+1.2
-5.8
+0.1
N.D.
-0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.1
-5.1
-0.0
N.D.
-0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.2
-3.2
-0.7
N.D.
-0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.3
-5.4
+0.1
N.D.
-0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.2
-5.4
+0.1
N.D.
-0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+1.0
-4.4
+0.0
N.D.
-0.2
stress
ALP with Cobalt chloride 0.25 mM
-0.4
-2.2
-0.4
N.D.
-0.5
stress
ALP with Zinc 2 mM
+0.1
-2.0
-0.4
N.D.
-0.8
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+1.6
-4.6
+0.3
N.D.
-0.4
stress
ALP with Cobalt chloride 0.2 mM
-0.2
-1.5
-0.4
N.D.
-1.0
stress
ALP with Nickel (II) chloride 3.5 mM
-0.1
-1.3
-0.4
N.D.
-0.9
carbon source
D,L-Lactate (C)
-0.2
-1.5
-0.3
N.D.
-0.7
stress
ALP with Nickel (II) chloride 1.5 mM
+0.1
-1.7
-0.3
N.D.
-0.8
carbon source
defined media with 30 mM sodium lactate
-0.1
-1.8
-0.5
N.D.
+0.2
stress
ALP with nitrate 50 mM
+0.3
-1.6
-0.2
N.D.
-0.6
stress
ALP with Fusidic 0.02 mg/ml
+0.6
-3.0
+0.2
N.D.
+0.2
stress
ALP with copper (II) chloride 0.6 mM
+0.4
-1.8
+0.6
N.D.
-0.9
stress
ALP with Nickel (II) chloride 2.5 mM
+0.4
-1.7
+0.3
N.D.
-0.6
stress
ALP with Fusidic 0.01 mg/ml
+0.7
-2.1
-0.0
N.D.
-0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+1.3
-2.8
+0.2
N.D.
-0.2
stress
ALP with Fusidic 0.007 mg/ml
+0.7
-1.7
+0.2
N.D.
-0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.7
-1.1
+0.7
N.D.
-0.4
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.8
-1.0
+0.7
N.D.
-0.5
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+1.4
-1.5
+0.2
N.D.
+0.0
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.8
-1.3
+0.5
N.D.
+0.2
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