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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1215 and Dsui_1216 are separated by 15 nucleotides
Dsui_1216 and Dsui_1217 are separated by 64 nucleotides
Dsui_1217 and Dsui_1218 are separated by 11 nucleotides
Dsui_1218 and Dsui_1219 are separated by 56 nucleotides
Dsui_1215: Dsui_1215 - FolB domain protein, at 1,272,260 to 1,272,613
_1215
Dsui_1216: Dsui_1216 - ybaK/ebsC protein, at 1,272,629 to 1,273,135
_1216
Dsui_1217: Dsui_1217 - tyrosine recombinase XerD, at 1,273,200 to 1,274,123
_1217
Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623
_1218
Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261
_1219
Group
Condition
Dsui
_1215
Dsui
_1216
Dsui
_1217
Dsui
_1218
Dsui
_1219
stress
ALP with Bacitracin 0.2 mg/ml
N.D.
-0.4
-1.7
N.D.
-0.4
stress
ALP with Zinc 1 mM
N.D.
-0.2
-1.7
N.D.
-0.2
carbon source
pyruvate (C)
N.D.
-0.2
-1.1
N.D.
-0.6
carbon source
D,L-Lactate (C)
N.D.
-0.6
-0.9
N.D.
-0.4
stress
ALP with nitrite 0.15 mM
N.D.
-0.3
-1.4
N.D.
-0.1
stress
ALP with Thallium(I) acetate 0.004 mg/ml
N.D.
+0.1
-1.8
N.D.
-0.2
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
-0.4
-1.1
N.D.
-0.1
stress
ALP with perchlorate 6 mM
N.D.
-0.6
-0.8
N.D.
-0.4
stress
ALP with copper (II) chloride 0.6 mM
N.D.
-0.0
-1.5
N.D.
-0.0
carbon source
propionate (C)
N.D.
-0.2
-1.1
N.D.
-0.2
stress
ALP with Zinc 2 mM
N.D.
-0.1
-1.5
N.D.
+0.1
carbon source
L-Lactate (C)
N.D.
-0.4
-1.0
N.D.
-0.1
stress
ALP with Fusidic 0.02 mg/ml
N.D.
+0.0
-0.9
N.D.
-0.7
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
+0.1
-1.6
N.D.
+0.0
stress
ALP with perchlorate 3 mM
N.D.
-0.6
-0.7
N.D.
-0.2
stress
ALP with Cisplatin 0.0007 mg/ml
N.D.
-0.3
-1.3
N.D.
+0.2
stress
ALP with Thallium(I) acetate 0.002 mg/ml
N.D.
-0.2
-1.0
N.D.
-0.1
stress
ALP with Nickel (II) chloride 3.5 mM
N.D.
+0.2
-1.7
N.D.
+0.2
stress
ALP with nitrate 75 mM
N.D.
-0.1
-1.2
N.D.
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.2
-1.5
N.D.
+0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.1
-1.0
N.D.
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.2
-1.0
N.D.
+0.2
stress
ALP with Thallium(I) acetate 0.003 mg/ml
N.D.
+0.2
-1.0
N.D.
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.1
-1.0
N.D.
+0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.2
-0.9
N.D.
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
-1.0
N.D.
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
-0.3
-0.8
N.D.
+0.9
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
+0.3
-0.7
N.D.
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
+0.3
-0.8
N.D.
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
+0.2
-0.8
N.D.
+0.5
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