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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1208 and Dsui_1209 are separated by 17 nucleotides
Dsui_1209 and Dsui_1210 are separated by 80 nucleotides
Dsui_1210 and Dsui_1211 are separated by 40 nucleotides
Dsui_1211 and Dsui_1212 are separated by 93 nucleotides
Dsui_1208: Dsui_1208 - tRNA-Met, at 1,265,671 to 1,265,747
_1208
Dsui_1209: Dsui_1209 - RNA polymerase sigma factor, sigma-70 family, at 1,265,765 to 1,267,735
_1209
Dsui_1210: Dsui_1210 - DNA primase, catalytic core, at 1,267,816 to 1,269,570
_1210
Dsui_1211: Dsui_1211 - hypothetical protein, at 1,269,611 to 1,270,057
_1211
Dsui_1212: Dsui_1212 - ribosomal protein S21, at 1,270,151 to 1,270,363
_1212
Group
Condition
Dsui
_1208
Dsui
_1209
Dsui
_1210
Dsui
_1211
Dsui
_1212
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
N.D.
N.D.
-0.4
N.D.
stress
ALP with Fusidic 0.01 mg/ml
N.D.
N.D.
N.D.
-0.4
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 100 uM Stressor (H2S)
N.D.
N.D.
N.D.
-0.3
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
-0.3
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor
N.D.
N.D.
N.D.
-0.3
N.D.
stress
ALP with copper (II) chloride 0.6 mM
N.D.
N.D.
N.D.
-0.3
N.D.
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
N.D.
N.D.
N.D.
-0.2
N.D.
carbon source
defined media with 30 mM sodium lactate
N.D.
N.D.
N.D.
-0.2
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
N.D.
N.D.
N.D.
-0.2
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
N.D.
N.D.
N.D.
-0.2
N.D.
stress
ALP with Fusidic 0.007 mg/ml
N.D.
N.D.
N.D.
-0.2
N.D.
alp richb
ALP
N.D.
N.D.
N.D.
+0.1
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
D,L-Lactate (C)
N.D.
N.D.
N.D.
+0.2
N.D.
stress
ALP with nitrite 0.45 mM
N.D.
N.D.
N.D.
+0.2
N.D.
stress
ALP with sodium fluoride 40 mM
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
+0.2
N.D.
stress
ALP with sodium fluoride 30 mM
N.D.
N.D.
N.D.
+0.2
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
N.D.
N.D.
+0.2
N.D.
stress
ALP with Cobalt chloride 0.2 mM
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
defined media with 40 mM sodium acetate
N.D.
N.D.
N.D.
+0.2
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
R2A with sodium pyruvate
N.D.
N.D.
N.D.
+0.2
N.D.
stress
rich media with sodium chlorite 0.16 mM
N.D.
N.D.
N.D.
+0.2
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
N.D.
N.D.
+0.2
N.D.
anaerobic
Anaero. lactate (C), nitrate electron acceptor
N.D.
N.D.
N.D.
+0.2
N.D.
stress
ALP with Cobalt chloride 0.25 mM
N.D.
N.D.
N.D.
+0.3
N.D.
carbon source
R2A with sodium pyruvate
N.D.
N.D.
N.D.
+0.3
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
N.D.
N.D.
N.D.
+0.4
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
N.D.
N.D.
+0.4
N.D.
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