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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1185 and Dsui_1186 are separated by 12 nucleotides
Dsui_1186 and Dsui_1187 are separated by 162 nucleotides
Dsui_1187 and Dsui_1188 overlap by 4 nucleotides
Dsui_1188 and Dsui_1189 overlap by 4 nucleotides
Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866
_1185
Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194
_1186
Dsui_1187: Dsui_1187 - type IV pilus assembly protein PilM, at 1,240,357 to 1,241,436
_1187
Dsui_1188: Dsui_1188 - Tfp pilus assembly protein PilN, at 1,241,433 to 1,242,002
_1188
Dsui_1189: Dsui_1189 - Tfp pilus assembly protein PilO, at 1,241,999 to 1,242,682
_1189
Group
Condition
Dsui
_1185
Dsui
_1186
Dsui
_1187
Dsui
_1188
Dsui
_1189
stress
ALP with Fusidic 0.01 mg/ml
-0.0
N.D.
-1.3
-0.8
-0.6
stress
ALP with Fusidic 0.02 mg/ml
-0.1
N.D.
-1.2
-0.8
-0.5
stress
ALP with Fusidic 0.007 mg/ml
+0.1
N.D.
-1.2
-0.7
-0.5
stress
ALP with copper (II) chloride 0.6 mM
-0.1
N.D.
-0.5
-0.5
-0.6
stress
rich media with sodium chlorite 0.16 mM
-0.4
N.D.
+0.3
+0.1
+0.1
alp rich
rich media
-0.5
N.D.
+0.3
+0.3
+0.3
carbon source
defined media with 30 mM sodium lactate
-0.2
N.D.
+0.4
+0.3
+0.3
carbon source
defined media with 30 mM sodium lactate
+0.1
N.D.
+0.4
+0.2
+0.2
alp rich
rich media
+0.1
N.D.
+0.4
+0.3
+0.2
carbon source
defined media with 30 mM sodium lactate
+0.2
N.D.
+0.3
+0.3
+0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
N.D.
+0.6
+0.4
+0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
N.D.
+0.7
+0.4
+0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
N.D.
+0.8
+0.4
+0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
+0.2
+0.3
+0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.3
N.D.
+0.5
+0.3
+0.3
stress
ALP with Nickel (II) chloride 2.5 mM
+0.4
N.D.
+0.2
+0.4
+0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.2
N.D.
+0.7
+0.5
+0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
+0.3
+0.3
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
+0.5
+0.4
+0.3
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.5
N.D.
+0.5
+0.4
+0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
+0.4
+0.5
+0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.6
N.D.
+0.4
+0.4
+0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
+0.4
+0.4
+0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
+0.5
+0.4
+0.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
+0.4
+0.4
+0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
+0.5
+0.4
+0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.6
N.D.
+0.5
+0.5
+0.3
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
+0.6
+0.6
+0.5
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.7
N.D.
+0.7
+0.5
+0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.8
N.D.
+0.7
+0.7
+0.5
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