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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1180 and Dsui_1181 overlap by 4 nucleotides
Dsui_1181 and Dsui_1182 are separated by 72 nucleotides
Dsui_1182 and Dsui_1183 overlap by 4 nucleotides
Dsui_1183 and Dsui_1184 are separated by 120 nucleotides
Dsui_1180: Dsui_1180 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 1,233,555 to 1,234,136
_1180
Dsui_1181: Dsui_1181 - signal transduction histidine kinase, at 1,234,133 to 1,235,533
_1181
Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862
_1182
Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032
_1183
Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470
_1184
Group
Condition
Dsui
_1180
Dsui
_1181
Dsui
_1182
Dsui
_1183
Dsui
_1184
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.8
-0.7
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.1
-0.4
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.7
-0.6
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.9
-0.3
N.D.
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.8
-0.3
N.D.
N.D.
N.D.
stress
ALP with nitrite 0.45 mM
-0.7
-0.2
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.6
-0.3
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.1
-1.0
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.1
N.D.
N.D.
N.D.
stress
ALP with nitrite 0.3 mM
-0.7
-0.1
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-0.1
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-0.5
N.D.
N.D.
N.D.
stress
ALP with Nickel (II) chloride 1.5 mM
-0.7
-0.1
N.D.
N.D.
N.D.
stress
ALP with copper (II) chloride 0.6 mM
-0.2
-0.6
N.D.
N.D.
N.D.
stress
ALP with nitrite 0.15 mM
-0.6
-0.1
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-0.1
N.D.
N.D.
N.D.
stress
rich media with sodium chlorite 0.16 mM
-0.2
-0.4
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.6
+0.0
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-0.2
N.D.
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.1
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.4
-0.2
N.D.
N.D.
N.D.
carbon source
defined media with 30 mM sodium lactate
-0.4
-0.1
N.D.
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.1
N.D.
N.D.
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.4
-0.1
N.D.
N.D.
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.4
+0.4
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.3
-0.3
N.D.
N.D.
N.D.
stress
rich media with sodium chlorite 0.16 mM
-0.0
+0.5
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.6
+0.0
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.6
+0.1
N.D.
N.D.
N.D.
carbon source
R2A with sodium pyruvate
+0.7
+0.1
N.D.
N.D.
N.D.
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