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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_1001 and Dsui_1002 overlap by 4 nucleotides
Dsui_1002 and Dsui_1003 are separated by 15 nucleotides
Dsui_1003 and Dsui_1004 are separated by 113 nucleotides
Dsui_1004 and Dsui_1005 are separated by 88 nucleotides
Dsui_1001: Dsui_1001 - hypothetical protein, at 1,028,965 to 1,030,335
_1001
Dsui_1002: Dsui_1002 - prolyl oligopeptidase family protein, at 1,030,332 to 1,031,246
_1002
Dsui_1003: Dsui_1003 - phosphoribosylglycinamide formyltransferase 2, at 1,031,262 to 1,032,494
_1003
Dsui_1004: Dsui_1004 - conserved protein of DIM6/NTAB family, at 1,032,608 to 1,033,159
_1004
Dsui_1005: Dsui_1005 - tRNA-Gly, at 1,033,248 to 1,033,321
_1005
Group
Condition
Dsui
_1001
Dsui
_1002
Dsui
_1003
Dsui
_1004
Dsui
_1005
stress
ALP with nitrite 0.3 mM
-1.0
-3.4
+0.3
-0.2
+0.3
alp richb
ALP
-1.1
-3.5
+0.4
-0.0
+0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.2
-2.4
+0.1
-0.3
-0.9
stress
ALP with perchlorate 3 mM
-1.5
-2.6
+0.4
+0.2
+0.3
carbon source
propionate (C)
-1.3
-3.1
+0.6
+0.5
+0.2
carbon source
L-Lactate (C)
-1.5
-1.7
+0.2
-0.1
+0.0
stress
ALP with Cisplatin 0.0007 mg/ml
-0.3
-3.0
+0.0
+0.1
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.0
-1.1
+0.4
-1.9
-0.1
stress
ALP with Zinc 2 mM
-0.6
-3.2
+0.5
+0.2
+0.5
carbon source
L-Lactate (C)
-1.0
-3.0
+0.4
+0.4
+0.6
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.0
-1.1
+0.1
+0.3
-0.9
stress
ALP with Bacitracin 0.2 mg/ml
-1.9
-1.4
+0.3
+0.2
+0.2
stress
ALP with perchlorate 12 mM
-1.6
-2.1
+0.6
+0.4
+0.2
stress
ALP with perchlorate 6 mM
-1.9
-1.5
+0.5
+0.3
+0.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.1
-1.0
+0.5
-1.8
-0.3
carbon source
pyruvate (C)
-1.5
-1.7
+0.4
+0.4
-0.0
stress
ALP with Zinc 1 mM
-1.0
-1.9
+0.5
-0.1
+0.2
carbon source
D,L-Lactate (C)
-1.6
-1.9
+0.4
+0.6
+0.2
stress
ALP with Chloride 75 mM
-1.7
-1.7
+0.4
+0.4
+0.4
carbon source
a-Ketoglutaric (C)
-0.6
-2.8
+0.4
+0.7
+0.3
stress
ALP with nitrite 0.45 mM
-1.0
-1.9
+0.4
+0.3
+0.3
stress
ALP with copper (II) chloride 0.6 mM
+0.2
-2.2
+0.2
+0.6
-0.1
carbon source
propionate (C)
-1.2
-1.4
+0.6
+0.3
+0.3
carbon source
D-Lactate (C)
-1.4
-1.0
+0.3
+0.8
+0.1
stress
ALP with Cisplatin 0.0009 mg/ml
-0.9
-1.4
+0.1
+0.6
+0.5
carbon source
D-Lactate (C)
-1.4
-0.7
+0.4
+1.0
-0.1
carbon source
pyruvate (C)
-1.5
-0.7
+0.4
+0.8
+0.3
stress
ALP with Fusidic 0.02 mg/ml
-1.5
-1.7
+1.2
+3.0
+0.1
stress
ALP with Fusidic 0.01 mg/ml
-1.4
-0.9
+1.1
+3.1
+0.2
stress
ALP with Fusidic 0.007 mg/ml
-1.7
-0.3
+1.2
+3.5
+0.0
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